reads-binning

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deepomicslab / SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens

Updated May 23, 2024
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wtsi-hpag / AncesBin

Star

Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies

pacbio hic genome-assembly 10x ont genome-ancestry reads-binning

Updated Oct 14, 2019
C

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