qiime
Here are 26 public repositories matching this topic...
Tutorials on microbiome analysis using the Quantitative Insights Into Microbial Ecology (QIIME) platform
-
Updated
Jul 29, 2017 - Shell
-
Updated
Nov 21, 2017 - Shell
A repository containing a demo microbiome workflow for R and Python
-
Updated
Apr 11, 2018 - Jupyter Notebook
Tools for phylogenetic data analysis including visualization and cluster-computing support.
-
Updated
Aug 10, 2018 - Python
This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequen…
-
Updated
Aug 14, 2018 - Perl
-
Updated
Feb 10, 2019 - Jupyter Notebook
Bioinformatics pipeline for analysis of diatom sequenced data
-
Updated
Jul 4, 2019 - Jupyter Notebook
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
-
Updated
Aug 21, 2020 - Shell
Tools for phylogenetic data analysis including visualization and cluster-computing support.
-
Updated
Dec 18, 2021 - Python
A fast and scalable phylogenetic tree viewer for microbiome data analysis
-
Updated
May 31, 2022 - JavaScript
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
-
Updated
Oct 26, 2022 - JavaScript
Improve this page
Add a description, image, and links to the qiime topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the qiime topic, visit your repo's landing page and select "manage topics."