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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 55 27

Repositories

Showing 10 of 88 repositories
  • micov Public

    Aggregate genome coverage

    biocore/micov’s past year of commit activity
    Python 3 1 8 1 Updated Jun 30, 2024
  • metagenomics_pooling_notebook Public

    Jupyter notebooks to assist with sample processing

    biocore/metagenomics_pooling_notebook’s past year of commit activity
    Python 8 MIT 16 36 (2 issues need help) 4 Updated Jun 30, 2024
  • mg-scripts Public

    Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

    biocore/mg-scripts’s past year of commit activity
    Python 1 BSD-3-Clause 4 16 5 Updated Jun 28, 2024
  • unifrac Public
    biocore/unifrac’s past year of commit activity
    Python 34 BSD-3-Clause 16 17 1 Updated Jun 28, 2024
  • improved-octo-waddle Public

    Balanced parentheses succinct data structure in Python

    biocore/improved-octo-waddle’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 5 16 2 Updated Jun 27, 2024
  • microsetta-private-api Public

    A private microservice to support The Microsetta Initiative

    biocore/microsetta-private-api’s past year of commit activity
    Python 6 BSD-3-Clause 19 65 4 Updated Jun 26, 2024
  • microsetta-admin Public
    biocore/microsetta-admin’s past year of commit activity
    Python 0 BSD-3-Clause 10 15 5 Updated Jun 25, 2024
  • calour Public

    exploratory and interactive microbiome analyses based on heatmaps

    biocore/calour’s past year of commit activity
    Python 26 BSD-3-Clause 22 60 3 Updated Jun 24, 2024
  • microsetta-interface Public

    The Microsetta participant facing user interface

    biocore/microsetta-interface’s past year of commit activity
    Jinja 1 BSD-3-Clause 16 44 1 Updated Jun 18, 2024
  • biom-format Public

    The Biological Observation Matrix (BIOM) Format Project

    biocore/biom-format’s past year of commit activity
    Python 87 95 16 0 Updated Jun 17, 2024
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