Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 with In Silico Protein Modeling and Docking
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Updated
May 28, 2024 - Mermaid
Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 with In Silico Protein Modeling and Docking
macromolecular crystallography library and utilities
Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Molecular simulation in Julia
Protein Graph Library
An open-source platform for developing protein models beyond AlphaFold.
A nano protein structure prediction model based on DeepMind's AlphaFold paper
Base Scipion plugin defining objects and protocols for CHEMoinformatics
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Neural Networks for Protein Sequence Alignment
SaprotHub: Making Protein Modeling Accessible to All Biologists
Fusion of protein sequence and structural information, using denoising pre-training network for protein engineering (zero-shot).
This package provides an basic implementation of the contact prediction network used in AlphaFold 1 for beginner, associated model weights and CASP13 dataset as used for CASP13 (2018) and published in Nature
Desarrollo de un script para la predicción de potenciales puentes disulfuro en proteínas a partir del archivo PDB. Este proyecto está comprendido dentro de la asignatura 'Bioinformática Estructural' del Máster en Bioinformática de la Universitat de València.
DiffModeler: a diffusion model based protein complex structure modeling tool.
Script to facilitate the making of horizontal scripts
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
The Integrative Modeling Platform
Python Modeling Interface
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