biosimulators / Biosimulators Star 13 Code Issues Pull requests Discussions Registry of containerized biosimulation tools that support a standard command-line interface docker simulation systems-biology computational-biology reuse reproducibility combine sbml mathematical-model sbo sed-ml omex kinetic-model kisao Updated May 21, 2024 Python
biosimulators / Biosimulators_utils Star 5 Code Issues Pull requests Utilities for building standardized command-line interfaces for biosimulation software packages python simulation systems-biology computational-biology combine mathematical-modeling sed-ml omex biosimulators kisao Updated Feb 16, 2024 Python
biosimulators / Biosimulators_MASSpy Star 1 Code Issues Pull requests MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container systems-biology computational-biology reaction-network metabolism combine sbml mathematical-model sed-ml numerical-simulation omex biosimulators kisao Updated Feb 23, 2022 Python
biosimulators / Biosimulators_XPP Star 0 Code Issues Pull requests XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container combine mathematical-model xpp sed-ml numerical-simulation omex biosimulators kisao Updated Feb 28, 2022 Python