Sydney-Informatics-Hub / Germline-StructuralV-nf Star 4 Code Issues Pull requests Germline structural variant calling pipeline for short read WGS datasets workflow bioinformatics pipeline genomics nextflow ngs manta bam survivor structural-variants smoove tiddit germline-variant-calling annotsv dsl2 australian-biocommons Updated Apr 8, 2024 Nextflow
nf-cmgg / germline Star 4 Code Issues Pull requests A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data annotation ngs germline cram ngs-pipeline genotyping germline-variant-calling short-reads Updated May 13, 2024 Nextflow
elixir-no-nels / Selma Star 3 Code Issues Pull requests Germline Variant Calling Pipeline built in Snakemake snakemake singularity scatter-gather containerized germline-variant-calling gatk4 Updated Feb 18, 2020 Shell
jpuntomarcos / CNVbenchmarkeR2 Star 1 Code Issues Pull requests Framework to benchmark germline copy-number variant detection tools from NGS data benchmark ngs copy-number-variation germline-variant-calling Updated May 28, 2024 R