Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
snakemake
tad
loop
hi-c
hic
hicexplorer
compartments
selfish
snakemake-pipeline
dchic
stripenn
genova
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Updated
Oct 28, 2023 - Python