a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
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Updated
Jun 2, 2024 - Jupyter Notebook
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
QuPath - Bioimage analysis & digital pathology
StarDist - Object Detection with Star-convex Shapes
数据可视化, 数据挖掘, 数据处理 ETL分析
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Segment Anything for Microscopy
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
Spatiotemporal modeling of spatial transcriptomics
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
Instance Segmentation with PyTorch & PyTorch Lightning.
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation (WACV 2023)
ClusterMap for multi-scale clustering analysis of spatial gene expression
StarDist plugin for napari
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
Automated identification of cell boundaries from the pathological video data
PyTorch implementation of several neural network models for cellular image segmentation
Cell tracking and segmentation software
A Hybrid CNN-Transformer Architecture for Precise Medical Image Segmentation
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