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The U-Net Segmentation plugin for Fiji (ImageJ)

FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets

A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

Z-stack Depth Colorcode ImageJ FIJI plugin

Plugins for bone image analysis

ImageJ convenience layer for N5

Curve tracing ImageJ plugin

Detection of Molecules plugin for ImageJ, Utrecht University

A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

Modular, object-based analysis for ImageJ/Fiji

🔬 This is an ImageJ or Fiji plugin to identify, characterize, quantify and classify cells according to user-defined conditions.

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

A plugin to combine power of mouse and keyboard control with image processing and analysis tools in ImageJ

ImageJ scripts for stereology and morphometry

ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)

Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.

ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves