theislab / cellrank Star 306 Code Issues Pull requests Discussions CellRank: dynamics from multi-view single-cell data data-science machine-learning bioinformatics genetics trajectory-generation markov-chains manifold-learning single-cell-genomics single-cell-rna-seq cell-fate-transitions fuzzy-clustering-analyses rna-velocity cell-fate-determination Updated Apr 23, 2024 Python
dpeerlab / Palantir Star 197 Code Issues Pull requests Single cell trajectory detection markov-chain dimensionality-reduction scrna-seq trajectory-generation diffusion-maps differentiation manifold-learning single-cell-genomics cell-fate-transitions scrna-seq-analysis Updated May 31, 2024 Jupyter Notebook
edroaldo / cellrouter Star 45 Code Issues Pull requests Reconstruction of complex single-cell trajectories using CellRouter scrna-seq trajectory-analysis stem-cell-differentiation cell-fate-transitions Updated Dec 14, 2018 R
ManuSetty / Palantir Star 3 Code Issues Pull requests Single cell trajectory detection machine-learning entropy dimensionality-reduction scrna-seq trajectory-generation diffusion-maps differentiation manifold-learning manifold-learing single-cell-genomics single-cell-rna-seq single-cell-analysis cell-fate-transitions Updated Aug 21, 2018 Jupyter Notebook