Removed pamr.knnimpute

pamr.knnimpute has been removed from the CRAN package pamr
syspremed · Apr 18, 2019 · 94a7fbc · 94a7fbc
1 parent 4439b9c
commit 94a7fbc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/pamCentroids.R b/R/pamCentroids.R
@@ -18,7 +18,7 @@ pamCentroids <- function(l){
  centroids <- lapply(1:ncol(allAssign), function(i, x, label){
  cl <- na.omit(as.numeric(x[,i]))
  dataList <- list(batchlabels = batchLabels, x = l$data[,names(na.omit(x[,i]))], y = cl, genenames = geneNames, geneid = geneID)
- capture.output(dataList <- pamr.knnimpute(dataList))
+ #capture.output(dataList <- pamr.knnimpute(dataList)) ## pamr.knnimpute has been removed from the CRAN package
  capture.output(dataTrain <- pamr.train(dataList))
  capture.output(pamTT <- pamr.listgenes(dataTrain, dataList, threshold = 0) %>%
  set_rownames(extract(.,,1)) %>%