Add a template project #208

dscrutils/inst/template/.gitattributes

@@ -0,0 +1,2 @@
+
+*.dsc linguist-language=YAML

dscrutils/inst/template/.gitignore

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+**/.sos

dscrutils/inst/template/modules/analyze.dsc

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+mean: utils.R + R(y <- mean(x))
+ x: $data
+ $est_mean: y

dscrutils/inst/template/modules/score.dsc

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+sq_err: utils.R + R(e <- (x - y)^2)
+ x: $est_mean
+ y: $true_mean
+ $error: e

dscrutils/inst/template/modules/simulate.dsc

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+normal: utils.R + R(x <- rnorm(n,mean = mu,sd = 1))
+ mu: 0
+ n: 100
+ $data: x
+ $true_mean: mu

dscrutils/inst/template/src/utils.R

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+# codes and functions to use as DSC modules

dscrutils/inst/template/template.dsc

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+#!/usr/bin/env dsc
+
+#
+# example usage: ./template.dsc --replicate 10
+#
+
+%include modules/*.dsc
+
+DSC:
+ define:
+ simulate: normal
+ analyze: mean
+ score: sq_err
+ run: simulate * analyze * score
+ output: template_out
+ exec_path: src

src/dsc_parser.py

@@ -146,12 +146,13 @@ def load_dsc(fn):
  raise FormatError(f'Invalid statement ``{line[0]}``. Perhaps you meant to use ``%include``?')
  if len(line) != 2:
  raise FormatError(f'Invalid %include statement ``{" ".join(line)}``. Should be ``%include filename.dsc``')
- if not os.path.isfile(line[1]) and os.path.isfile(line[1] + '.dsc'):
- new_content.extend(DSC_Script.load_dsc(line[1] + '.dsc'))
- elif os.path.isfile(line[1]):
- new_content.extend(DSC_Script.load_dsc(line[1]))
- else:
- raise FormatError(f'Cannot find file ``{line[1]}`` to include.')
+ for f in glob.glob(line[1]):
+ if not os.path.isfile(f) and os.path.isfile(f + '.dsc'):
+ new_content.extend(DSC_Script.load_dsc(f + '.dsc'))
+ elif os.path.isfile(f):
+ new_content.extend(DSC_Script.load_dsc(f))
+ else:
+ raise FormatError(f'Cannot find file ``{f}`` to include.')
  return new_content + [x for x in content if not x.startswith('%') and not x.startswith('#!')]
 
  def update(self, text, exe):