no version #38

	name: Goodman Pipeline with Conda

	on: [push]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python 3.8
	uses: actions/setup-python@v2
	with:
	python-version: 3.8
	- name: Install dependencies
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	$CONDA/bin/conda env update --file environment.yml --name base
	- name: Compile DCR Binaries
	run: \|
	SOURCE_DIR=${{ github.workspace }}/goodman_pipeline/data/dcr-source/dcr
	make --directory $SOURCE_DIR
	chmod +x $SOURCE_DIR/dcr
	echo "${{ github.workspace }}/goodman_pipeline/data/dcr-source/dcr" >> $GITHUB_PATH
	- name: Lint with flake8
	run: \|
	$CONDA/bin/conda install flake8
	# stop the build if there are Python syntax errors or undefined names
	$CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	$CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	conda install pytest
	$CONDA/bin/pytest

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