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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

feat: add toulligqc wrapper
#3171 opened Sep 10, 2024 by Salome-Brunon Loading…
7 tasks done
@fgvieira
23
feat: create nanosim wrapper for all three modes of simulator.py
#3165 opened Sep 3, 2024 by dlaehnemann Loading…
7 tasks done
23
perf: autobump bio/kallisto/index bio/kallisto/index
#3091 opened Jul 26, 2024 by snakedeploy-bot bot Loading…
1
perf: autobump bio/kallisto/quant bio/kallisto/quant
#3090 opened Jul 26, 2024 by snakedeploy-bot bot Loading…
2
feat: added wrapper for Paraphase
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
74
feat: Add a wrapper for quarto markdown rendering
#3003 opened Jun 20, 2024 by votti Loading…
1 task done
24
perf: autobump bio/sortmerna bio/sortmerna
#2985 opened Jun 7, 2024 by snakedeploy-bot bot Loading…
5
feat: ensembl reference collections
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
8
feat: add aria2c wrapper
#2725 opened Mar 7, 2024 by fgvieira Loading…
1 task done
14
feat: Add configurable protocol support to ensembl reference download
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
10
feat: add Orthanq wrappers for hla and virus applications
#2640 opened Feb 4, 2024 by huzuner Loading…
1 task
11
perf: autobump bio/gdc-client/download bio/gdc-client/download
#2031 opened Oct 31, 2023 by snakedeploy-bot bot Loading…
7
feat: add wrapper for metaDMG Stale
#1809 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: add ngsngs wrapper Stale
#1808 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: new inphared-db wrapper Stale
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
12
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Loading…
1 task done
6
fix: Allow concurrent and large refgenie downloads Stale
#1172 opened Mar 28, 2023 by Austin-s-h Loading…
1 task done
8
perf: autobump bio/trimmomatic/se bio/trimmomatic/se
#869 opened Nov 11, 2022 by snakedeploy-bot bot Loading…
1
perf: autobump bio/trimmomatic/pe bio/trimmomatic/pe
#778 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
1
perf: autobump bio/dragmap/align bio/dragmap/align
#775 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
3
perf: autobump bio/rubic bio/rubic
#631 opened Oct 26, 2022 by snakedeploy-bot bot Loading…
1
Update wrapper documentation Stale
#392 opened Jul 22, 2021 by tdayris Loading…
10 of 12 tasks
6
Add GATK ValidateVariants stale: contribution welcome Please feel free to finalize this work. Stale
#390 opened Jul 19, 2021 by G-kodes Loading…
12 tasks done
7
Add cosmic database download wrapper stale: contribution welcome Please feel free to finalize this work.
#345 opened Apr 22, 2021 by tedil Loading…
4
Add checksum verification for ENSEMBL sequence and annotation wrappers stale: contribution welcome Please feel free to finalize this work.
#36 opened Dec 4, 2019 by mobilegenome Loading…
9
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