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@siplab-gt

SIPLab

README.md

Welcome! 👋

This is the home of software produced by the Structured Information for Precision Neuroengineering Lab (SIPLab) led by Chris Rozell and Sankar Alagapan at Georgia Tech.

Our research focus is in computational neuroengineering, an intersection of data science, neurotechnology and computational modeling that aims to advance the understanding of brain function and the design of effective interventions.

See CLOCTools for real-time closed-loop optogenetic control software, developed in collaboration with the Garrett Stanley lab.

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  1. generative-causal-explanations generative-causal-explanations Public

    Code for "Generative causal explanations of black-box classifiers"

    Python 32 12

  2. infotuple infotuple Public

    Code supplement for "Active Ordinal Querying for Tuplewise Similarity Learning", appearing in AAAI 2020

    Python 5 1

  3. pairsearch pairsearch Public

    Project code for "Active Embedding Search via Noisy Paired Comparisons" (ICML 2019)

    Python 8 3

  4. manifold-autoencoder-extended manifold-autoencoder-extended Public

    Jupyter Notebook 3 2

  5. cleo cleo Public

    Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

    Jupyter Notebook 11

Repositories

Showing 10 of 28 repositories
  • cleo-v1-plasticity-expt Public

    Code for the V1 plasticity disruption experiment in the Cleo publication

    siplab-gt/cleo-v1-plasticity-expt’s past year of commit activity
    Python 0 0 0 0 Updated Jun 13, 2024
  • tklfp Public

    Lightweight package for computing the kernel LFP approximation from Teleńczuk et al., 2020

    siplab-gt/tklfp’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jun 7, 2024
  • wslfp Public

    Lightweight package for computing the Weighted Sum of synaptic currents LFP proxy from Mazzoni, Lindén et al., 2015

    siplab-gt/wslfp’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jun 7, 2024
  • cleo Public

    Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

    siplab-gt/cleo’s past year of commit activity
    Jupyter Notebook 11 MIT 0 7 (1 issue needs help) 1 Updated Jun 4, 2024
  • cleo-traveling-wave-rejection Public
    siplab-gt/cleo-traveling-wave-rejection’s past year of commit activity
    Python 0 0 0 0 Updated May 31, 2024
  • cleo-hpc-experiments Public
    siplab-gt/cleo-hpc-experiments’s past year of commit activity
    Python 0 1 0 0 Updated May 29, 2024
  • probabilistic-decomposed-linear-dynamical-systems Public

    Probabilistic Decomposed Linear Dynamical Systems

    siplab-gt/probabilistic-decomposed-linear-dynamical-systems’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 1, 2024
  • uot-irst Public

    Implementation of unbalanced optimal transport algorithms for infrared search and track from Bertrand et al., 2020

    siplab-gt/uot-irst’s past year of commit activity
    MATLAB 0 0 0 0 Updated Oct 31, 2023
  • emd-df Public

    MATLAB implementation of the Earth Mover's Distance Dynamic Filtering (EMD-DF) algorithm from Bertrand et al., 2018

    siplab-gt/emd-df’s past year of commit activity
    MATLAB 0 0 0 0 Updated Oct 31, 2023
  • Decomposed-Linear-Dynamical-Systems Public

    This is code for the paper "Decomposed Linear Dynamical Systems (dLDS) for learning the latent components of neural dynamics" (Mudrik, 2022)

    siplab-gt/Decomposed-Linear-Dynamical-Systems’s past year of commit activity
    0 0 0 0 Updated Oct 30, 2023
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