Updates for public facing repo (#1)

* plot fixes and updates

* all the updates

* install in readme from repo

* remove mac binary directive from readme

* date

* fix r cmd check note; exclude macos r cmd check

.Rbuildignore

@@ -0,0 +1,2 @@
+^\.github$
+^README.Rmd

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,45 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true

.gitignore

@@ -1,3 +1,5 @@
+### R ###
+
 # History files
 .Rhistory
 .Rapp.history
@@ -37,3 +39,32 @@ vignettes/*.pdf
 
 # R Environment Variables
 .Renviron
+
+### macOS ###
+
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: SuperSelector
 Title: Uses CV SuperLearner for Ensembled Feature Selection
-Version: 0.0.10
-Date: 2020-10-06
+Version: 0.1.0
+Date: 2023-11-02
 Authors@R: 
     person(given = "Sara",
            family = "Moore",
@@ -13,6 +13,7 @@ Depends:
     R (>= 2.14.0)
 Imports:
     stats,
+    rlang,
     dplyr,
     magrittr,
     purrr,
@@ -29,10 +30,13 @@ Imports:
     simcausal,
     MASS,
     RColorBrewer
+Remotes:
+    saraemoore/SLScreenExtra,
+    osofr/simcausal
 Suggests:
     FSelector
 License: GPL-3
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.1.1
+RoxygenNote: 7.2.3

NAMESPACE

@@ -4,6 +4,7 @@ export(cutoff.val)
 export(cvSLFeatureSelector)
 export(cvSLVarImpPlot)
 export(cvSLVarImpPlot2)
+export(factor_to_indicator)
 export(groupBySelectionSet)
 export(makeLibArgNumeric)
 export(plot_dag_proppr_data)
@@ -27,6 +28,7 @@ importFrom(MASS,mvrnorm)
 importFrom(RColorBrewer,brewer.pal)
 importFrom(SuperLearner,CV.SuperLearner)
 importFrom(SuperLearner,recombineCVSL)
+importFrom(dplyr,across)
 importFrom(dplyr,arrange)
 importFrom(dplyr,bind_cols)
 importFrom(dplyr,bind_rows)
@@ -67,6 +69,7 @@ importFrom(purrr,map)
 importFrom(purrr,map2)
 importFrom(purrr,map_chr)
 importFrom(reshape2,melt)
+importFrom(rlang,.data)
 importFrom(scales,brewer_pal)
 importFrom(scales,percent)
 importFrom(simcausal,DAG.empty)
@@ -77,6 +80,9 @@ importFrom(simcausal,simobs)
 importFrom(stats,binomial)
 importFrom(stats,gaussian)
 importFrom(stats,median)
+importFrom(stats,model.matrix)
+importFrom(stats,plogis)
+importFrom(stats,rnorm)
 importFrom(stats,setNames)
 importFrom(tibble,add_column)
 importFrom(tibble,remove_rownames)