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Update suggesting installation and execution of the pipeline via nf #2

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@hoelzer hoelzer commented Nov 13, 2024

Hey,

I just showed your pipeline to Lotte to use it and I find it beter/more stable to execute the pipeline via nextflow and not let the user clone the code via github.

Via that, you also have more control of which versions users are running (reproducibility). I also strongly suggest doing release versions of the pipeline (see #1 ).

My PR expects you are doing a release 0.0.1 but of course you can also change that by pushing to this PR branch.

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