update with pip badge

qiaochen · Jul 21, 2023 · eaca3f2 · eaca3f2
1 parent 4c327d8
commit eaca3f2
Show file tree

Hide file tree

Showing 3 changed files with 12 additions and 8 deletions.
diff --git a/docs/index.rst b/docs/index.rst
@@ -1,7 +1,7 @@
-|Docs| |Build Status|
+|Docs| |PyPI| |Build Status|
 
-.. .. |PyPI| image:: https://img.shields.io/pypi/v/transp.svg
-..  :target: https://pypi.org/project/transpa/
+.. |PyPI| image:: https://badge.fury.io/py/transpa.svg
+ :target: https://pypi.org/project/transpa/
 .. |Docs| image:: https://readthedocs.org/projects/transpa/badge/?version=latest
  :target: https://transpa.readthedocs.io/en/latest/
 .. |Build Status| image:: https://api.travis-ci.com/qiaochen/tranSpa.svg?branch=main

diff --git a/docs/install.rst b/docs/install.rst
@@ -1,12 +1,12 @@
 Installation
 ============
 
-.. TransImp is available through `PyPI <https://pypi.org/project/tranSpa/>`_.
-.. To install, type the following command line and add ``-U`` for updates:
+TransImp is available through `PyPI <https://pypi.org/project/transpa/>`_.
+To install, type the following command line and add ``-U`` for updates:
 
-.. .. code-block:: bash
+.. code-block:: bash
 
-..  pip install -U transpa
+ pip install -U transpa
 
 Dependent packages can be installed seperatedly with `requirements.txt`:
 

diff --git a/setup.py b/setup.py
@@ -18,9 +18,13 @@
  'pandas',
  'matplotlib',
  'tqdm',
+ 'torchmetrics',
  'anndata>=0.7.4',
  'scanpy>=1.5.1',
- 'torch>=1.7',
+ 'torch>=1.13.0',
+ 'umap-learn>=0.5.3',
+ 'torchvision>=0.14.0',
+ 'torchaudio',
  'scikit-learn',
  'squidpy',
  ]