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UCL Bioinformatics Group

UCL bioinformatics group repositories

Popular repositories

  1. protein-vae protein-vae Public

    Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

    Python 79 17

  2. DMPfold DMPfold Public

    De novo protein structure prediction using iteratively predicted structural constraints

    C 55 16

  3. cgdms cgdms Public

    Differentiable molecular simulation of proteins with a coarse-grained potential

    Python 52 4

  4. psipred psipred Public

    PSIPRED Protein Secondary Structure Predictor

    Java 50 10

  5. DMPfold2 DMPfold2 Public

    Fast and accurate protein structure prediction

    Python 47 11

  6. DeepCov DeepCov Public

    Fully convolutional neural networks for protein residue-residue contact prediction

    Python 44 14

Repositories

Showing 10 of 45 repositories
  • analytics_automated Public Forked from AnalyticsAutomated/analytics_automated

    Middleware layer for exposing analytics and distributed computing jobs as web services

    psipred/analytics_automated’s past year of commit activity
    Python 0 4 0 0 Updated Jun 19, 2024
  • psipred_react Public

    A react port of the psipred_webserver dynamic pages

    psipred/psipred_react’s past year of commit activity
    JavaScript 1 0 1 0 Updated Jun 19, 2024
  • merizo_search Public

    Fast structure embedding search tool for Merizo

    psipred/merizo_search’s past year of commit activity
    Python 1 GPL-3.0 2 0 0 Updated Jun 13, 2024
  • webserver_test_dbs Public

    A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting

    psipred/webserver_test_dbs’s past year of commit activity
    0 0 0 0 Updated Jun 12, 2024
  • ansible_rocky Public

    new, united ansible repo for rocky machines

    psipred/ansible_rocky’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 11, 2024
  • Merizo Public

    Fast and accurate protein domain segmentation using Invariant Point Attention

    psipred/Merizo’s past year of commit activity
    Python 16 GPL-3.0 5 0 0 Updated Jun 3, 2024
  • DMPmetal Public

    repository for the DMPmetal metal binding site predictor

    psipred/DMPmetal’s past year of commit activity
    Python 0 0 0 0 Updated Apr 18, 2024
  • hspred Public

    Protein-protein interaction hotspot predictor

    psipred/hspred’s past year of commit activity
    Perl 1 0 0 0 Updated Apr 17, 2024
  • web_server_scripts Public

    Web server helper scripts

    psipred/web_server_scripts’s past year of commit activity
    Python 0 0 0 0 Updated Apr 17, 2024
  • mempack Public

    Membrane alpha helix packing and orientation predicrtor

    psipred/mempack’s past year of commit activity
    Perl 1 1 0 0 Updated Apr 17, 2024

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