{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"squidpy","owner":"scverse","isFork":false,"description":"Spatial Single Cell Analysis in Python","allTopics":["data-visualization","spatial-analysis","image-analysis","single-cell-genomics","single-cell-rna-seq","spatial-transcriptomics","squidpy"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":57,"starsCount":415,"forksCount":75,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,7,0,1,2,0,1,0,1,0,2,0,0,0,0,0,0,0,6,8,0,3,0,0,0,0,0,0,0,1,1,0,0,0,4,0,1,0,0,0,3,0,2,4,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-27T12:09:35.322Z"}},{"type":"Public","name":"anndata","owner":"scverse","isFork":false,"description":"Annotated data.","allTopics":["data-science","machine-learning","bioinformatics","transcriptomics","scanpy","anndata","scverse"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":53,"issueCount":178,"starsCount":553,"forksCount":150,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[4,10,0,1,2,14,9,0,4,6,1,3,2,1,2,3,1,1,3,10,2,10,1,5,7,2,2,5,6,3,2,2,8,0,3,3,1,2,1,3,3,6,6,4,5,3,1,2,1,9,1,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-27T11:38:18.745Z"}},{"type":"Public","name":"squidpy_notebooks","owner":"scverse","isFork":false,"description":"Tutorials for Squidpy","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":6,"starsCount":27,"forksCount":17,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-27T09:13:16.155Z"}},{"type":"Public","name":"scvi-tutorials","owner":"scverse","isFork":false,"description":"Notebooks used in scvi-tools tutorials","allTopics":["scvi-tools","scverse","tutorial"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":7,"issueCount":9,"starsCount":43,"forksCount":24,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T21:21:38.954Z"}},{"type":"Public","name":"spatialdata-plot","owner":"scverse","isFork":false,"description":"Static plotting for spatialdata","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":9,"issueCount":48,"starsCount":27,"forksCount":13,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T20:28:45.670Z"}},{"type":"Public","name":"napari-spatialdata","owner":"scverse","isFork":false,"description":"Interactive visualization of spatial omics data","allTopics":["visualization","spatial-analysis","napari-plugin","napari","spatial-omics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":42,"starsCount":36,"forksCount":14,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T20:22:05.958Z"}},{"type":"Public","name":"rapids_singlecell","owner":"scverse","isFork":false,"description":"Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.","allTopics":["bioinformatics","gpu","single-cell","anndata","scverse"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":8,"starsCount":123,"forksCount":19,"license":"MIT License","participation":[0,2,4,2,2,4,0,3,0,3,4,3,0,0,1,6,1,0,4,2,1,1,2,1,1,3,1,1,6,6,6,5,6,6,1,2,9,1,1,3,0,4,3,3,3,5,2,3,3,2,4,4],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T20:03:14.619Z"}},{"type":"Public","name":"pertpy","owner":"scverse","isFork":false,"description":"Perturbation Analysis in the scverse ecosystem.","allTopics":["single-cell","perturbation","scverse"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":31,"starsCount":125,"forksCount":20,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:38:19.163Z"}},{"type":"Public","name":"spatialdata-io","owner":"scverse","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":21,"starsCount":33,"forksCount":24,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:05:37.782Z"}},{"type":"Public","name":"spatialdata","owner":"scverse","isFork":false,"description":"An open and interoperable data framework for spatial omics data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":145,"starsCount":209,"forksCount":40,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:05:09.539Z"}},{"type":"Public","name":"ecosystem-packages","owner":"scverse","isFork":false,"description":"Registry for scverse ecosystem packages (<a href=\"https://scverse.org/packages/#ecosystem\" rel=\"nofollow\">https://scverse.org/packages/#ecosystem</a>)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":6,"starsCount":18,"forksCount":40,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:05:07.522Z"}},{"type":"Public","name":"scanpy","owner":"scverse","isFork":false,"description":"Single-cell analysis in Python. Scales to &gt;1M cells.","allTopics":["data-science","machine-learning","bioinformatics","transcriptomics","visualize-data","scanpy","anndata","scverse","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":65,"issueCount":504,"starsCount":1856,"forksCount":594,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:05:07.168Z"}},{"type":"Public","name":"cookiecutter-scverse","owner":"scverse","isFork":false,"description":"Cookiecutter template for scverse","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":13,"starsCount":67,"forksCount":8,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:05:05.005Z"}},{"type":"Public","name":"prelude-runner","owner":"scverse","isFork":false,"description":"Jupyter notebook runner that executes preludes before each cell","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:57.320Z"}},{"type":"Public","name":"scverse-tutorials","owner":"scverse","isFork":false,"description":"Tutorials for learning scverse","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":13,"starsCount":11,"forksCount":12,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:57.284Z"}},{"type":"Public","name":"plotting_api","owner":"scverse","isFork":false,"description":"Experimenting with a simplified plotting API for scanpy/scirpy","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":2,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:56.962Z"}},{"type":"Public","name":"scvi-tools","owner":"scverse","isFork":false,"description":"Deep probabilistic analysis of single-cell and spatial omics data","allTopics":["deep-learning","scrna-seq","variational-autoencoder","variational-bayes","single-cell-genomics","single-cell-rna-seq","deep-generative-model","cite-seq","human-cell-atlas","scverse"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":17,"issueCount":58,"starsCount":1190,"forksCount":346,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[1,3,1,1,1,3,7,3,5,1,3,4,8,2,11,3,0,0,3,1,17,7,8,14,6,9,9,4,0,3,3,20,10,6,5,4,2,5,1,7,2,3,1,18,5,11,1,4,5,6,5,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:56.893Z"}},{"type":"Public","name":"scirpy","owner":"scverse","isFork":false,"description":"A scanpy extension to analyse single-cell TCR and BCR data.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":44,"starsCount":211,"forksCount":34,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:51.263Z"}},{"type":"Public","name":"scanpy-tutorials","owner":"scverse","isFork":false,"description":"Scanpy Tutorials.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":15,"starsCount":181,"forksCount":112,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:51.618Z"}},{"type":"Public","name":"pytometry","owner":"scverse","isFork":false,"description":"Flow &amp; mass cytometry analytics.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":11,"starsCount":41,"forksCount":10,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:44.106Z"}},{"type":"Public","name":"genomic-features","owner":"scverse","isFork":false,"description":"Genomic Features in Python from BioConductor's AnnotationHub","allTopics":["genomics","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":19,"starsCount":18,"forksCount":5,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:04:40.751Z"}},{"type":"Public","name":"cookiecutter-scverse-instance","owner":"scverse","isFork":false,"description":"Example repository generated from <a href=\"https://github.com/scverse/cookiecutter-scverse\">https://github.com/scverse/cookiecutter-scverse</a>. This repo is updated automatically to match the latest version of the template.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":1,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-25T11:27:54.236Z"}},{"type":"Public","name":"scverse.github.io","owner":"scverse","isFork":false,"description":"scverse.org website","allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":1,"issueCount":17,"starsCount":1,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T02:06:31.123Z"}},{"type":"Public","name":"anndataR","owner":"scverse","isFork":false,"description":"AnnData interoperability in R","allTopics":["anndata","h5ad"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":14,"issueCount":19,"starsCount":50,"forksCount":8,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-15T19:43:15.795Z"}},{"type":"Public","name":"anndata-tutorials","owner":"scverse","isFork":false,"description":"Use cases for anndata.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":1,"starsCount":13,"forksCount":12,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T16:58:05.039Z"}},{"type":"Public","name":"spatialdata-notebooks","owner":"scverse","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":3,"issueCount":5,"starsCount":34,"forksCount":17,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T15:30:18.601Z"}},{"type":"Public","name":"mudata","owner":"scverse","isFork":false,"description":"Multimodal Data (.h5mu) implementation for Python","allTopics":["genomics","muon","data-analysis","multi-omics","anndata","multimodal-omics-analysis","mudata","scverse"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":9,"starsCount":72,"forksCount":16,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T22:16:56.129Z"}},{"type":"Public","name":"simple-scvi","owner":"scverse","isFork":false,"description":"Simple scVI implementation","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":8,"forksCount":4,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-05T18:14:17.131Z"}},{"type":"Public","name":"pertpy-tutorials","owner":"scverse","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":4,"forksCount":8,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-03T06:47:03.361Z"}},{"type":"Public","name":"shadows","owner":"scverse","isFork":false,"description":"Shadow objects for AnnData and MuData (experimental)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-02T00:55:22.811Z"}}],"repositoryCount":45,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"scverse repositories"}