Repositories list

• prophaser

  Public
  Imputation of genotype data based on the full probabilistic Li and Stephens model

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •3•5•0•0•Updated Mar 12, 2024Mar 12, 2024

• GenoCAE

  Public
  Convolutional autoencoder for genotype data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•0•0•0•Updated Feb 22, 2022Feb 22, 2022

• sesegpu

  Public
  Repository for SeSE course GPU programming for Machine Learning and Data Processing

  Jupyter Notebook

  •

  Apache License 2.0

  •2•3•0•0•Updated Nov 12, 2021Nov 12, 2021

• sbplib

  Public
  Matlab library for prototyping Summation-by-parts finite-differences schemes. Mirror of https://bitbucket.org/sbpteam/sbplib/

  MATLAB

  •

  Other

  •2•3•0•0•Updated Jan 22, 2021Jan 22, 2021

• HaploCluster

  Public
  Clustering a set of haplotypes by successive splitting and merging steps.

  Jupyter Notebook

  •1•0•0•0•Updated May 28, 2020May 28, 2020

• TypeAnnotateCheck

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jun 17, 2019Jun 17, 2019

• sciope

  Public
  Python

  •

  Other

  •11•0•0•0•Updated May 29, 2019May 29, 2019

• mpca

  Public
  methods for handling missing data in PCA

  Python

  •

  Other

  •3•0•0•0•Updated Apr 17, 2019Apr 17, 2019

• cannyfs

  Public
  A shim file system giving excellent throughput by assuming all I/O operations CAN complete successfully.

  C++

  •

  GNU General Public License v2.0

  •3•0•0•0•Updated Apr 5, 2018Apr 5, 2018

• cnF2freq

  Public
  Compute haplotype and genotype probabilities, and perform imputation, in arbitrary pedigrees, including cases under possible observational errors.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Jan 23, 2018Jan 23, 2018