Repositories list

• immunarch

  Public
  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  bioinformaticsimmunologyt-cell-receptor+ 17tcrrep-seqsingle-celligimmunoglobulinimmunoinformaticstcr-repertoire+ 10

  R

  •

  Apache License 2.0

  •66•311•154•6•Updated Apr 9, 2024Apr 9, 2024

• rpy2

  Public
  Interface to use R from Python

  Python

  •

  GNU General Public License v2.0

  •74•0•0•0•Updated Jan 20, 2023Jan 20, 2023

• external-packages

  Public
  Dedicated place for pre-build packages

  Dockerfile

  •0•0•0•0•Updated Dec 6, 2022Dec 6, 2022

• zipfly

  Public
  Writing large ZIP archives without memory inflation

  Python

  •

  MIT License

  •26•0•0•0•Updated Oct 20, 2022Oct 20, 2022

• bi2021spring

  Public
  A project for students from Bioinformatics Institute Spring 2021 class.

  0•2•0•1•Updated May 29, 2021May 29, 2021

• assessment_R_dev_fall2020

  Public
  The coding task for R software developer.

  R

  •0•0•0•0•Updated Oct 15, 2020Oct 15, 2020

• python_interns_fall2020

  Public
  The coding task for python software developer interns

  Python

  •1•0•0•0•Updated Aug 10, 2020Aug 10, 2020

• docpages_alpha

  Public
  Cloned Immunarch for docs and website testing purposes.

  R

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Jul 8, 2020Jul 8, 2020

• covid19

  Public
  🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

  bioinformaticst-cellantibody+ 10rep-seqscrna-seq-dataimmunoinformaticscomputational-immunologyimmune-repertoire-datacovid-19sars-cov-2+ 3

  MIT License

  •3•44•1•0•Updated May 21, 2020May 21, 2020

• immunarch-shiny

  Public
  R

  •2•2•0•0•Updated Mar 22, 2020Mar 22, 2020

• slides

  Public
  Slides for presentations by ImmunoMind team

  machine-learningbioinformaticsdeep-learning+ 5immunologyimmunoinformaticstcr-repertoirepresentation-slidesbcr-repertoire

  0•3•0•0•Updated May 15, 2019May 15, 2019

• 2019-airr-genova-tutorial-pytorch

  Public
  Incredible Deep Learning in immunooncology with Pytorch - workshop at AIRR Community Meeting IV

  pytorchimmunologymhc+ 2immunoinformaticspytorch-tutorial

  Jupyter Notebook

  •0•9•0•0•Updated May 13, 2019May 13, 2019