Chan Zuckerberg Initiative

All

254 repositories

single-cell-curation
Public
Code and documentation for the curation of cellxgene datasets
Python
•
MIT License
•24•39•56•6•Updated Jan 5, 2025Jan 5, 2025
single-cell-data-portal
Public
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
TypeScript
•
MIT License
•14•65•261•16•Updated Jan 5, 2025Jan 5, 2025
sci-components
Public
2021 Science Design System Component Library
react css theme design-system
TypeScript
•
MIT License
•7•25•111•3•Updated Jan 5, 2025Jan 5, 2025
cryoet-data-portal-backend
Public
CryoET Data Portal API server & ingestion scripts
Python
•
MIT License
•2•3•6•10•Updated Jan 4, 2025Jan 4, 2025
edu-design-system
Public
Design system for Education Projects
react design-system style-dictionary
TypeScript
•
MIT License
•4•29•1•2•Updated Jan 3, 2025Jan 3, 2025
cryoet-data-portal
Public
CryoET Data Portal
TypeScript
•
MIT License
•11•21•246•8•Updated Jan 3, 2025Jan 3, 2025
czid-workflows
Public
Portable WDL workflows for CZ ID production pipelines
Python
•
MIT License
•7•41•3•9•Updated Jan 3, 2025Jan 3, 2025
czid-web
Public
Infectious Disease Sequencing Platform
science research biology sequencing computational-biology next-generation-sequencing bioinformatics-pipeline global-health virology infectious-diseases
TypeScript
•
MIT License
•24•81•0•2•Updated Jan 3, 2025Jan 3, 2025
camelot
Public
Go
•
MIT License
•0•1•0•1•Updated Jan 2, 2025Jan 2, 2025
go-misc
Public
miscellaneous go code
Go
•
MIT License
•3•7•1•3•Updated Jan 2, 2025Jan 2, 2025
fogg
Public
Manage Infrastructure as Code with less pain.
terraform infrastructure-as-code infrastructure
Go
•
MIT License
•20•296•37•2•Updated Dec 30, 2024Dec 30, 2024
happy
Public
Happy Path Deployment Tool
kubernetes infrastructure terraform
Go
•
MIT License
•2•18•13•18•Updated Dec 30, 2024Dec 30, 2024
cryoet-data-portal-neuroglancer
Public
CryoET Data Portal Neuroglancer configuration helper
Python
•
MIT License
•2•1•1•4•Updated Dec 24, 2024Dec 24, 2024
single-cell-explorer
Public
Hosted version of cellxgene
TypeScript
•
MIT License
•3•12•60•3•Updated Dec 24, 2024Dec 24, 2024
cellxgene-ontology-guide
Public
Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
Python
•
MIT License
•1•5•8•5•Updated Dec 23, 2024Dec 23, 2024
cztack
Public
The CZI infrastructure stack.
HCL
•
MIT License
•25•65•3•5•Updated Dec 19, 2024Dec 19, 2024
cellxgene-census
Public
CZ CELLxGENE Discover Census
Jupyter Notebook
•
MIT License
•22•91•118•17•Updated Dec 16, 2024Dec 16, 2024
napari-hub
Public
Discover, install, and share napari plugins
python tracking machine-learning deep-learning analysis detection plugins themes registration segmentation
TypeScript
•
MIT License
•18•51•96•10•Updated Dec 12, 2024Dec 12, 2024
czid-graphql-federation-server
Public
GraphQL Mesh server for CZ ID
TypeScript
•
MIT License
•0•0•0•7•Updated Dec 11, 2024Dec 11, 2024
homebrew-tap
Public
Ruby
•2•3•2•0•Updated Dec 10, 2024Dec 10, 2024
argus-artifacts
Public
MIT License
•0•1•0•0•Updated Dec 10, 2024Dec 10, 2024
github-actions
Public
A collection of re-usable GitHub Actions
HCL
•
MIT License
•3•5•1•2•Updated Dec 10, 2024Dec 10, 2024
cellxgene
Public
An interactive explorer for single-cell transcriptomics data
dataviz scrna-seq transcriptomics visualization scientific
JavaScript
•
MIT License
•124•652•129•0•Updated Dec 7, 2024Dec 7, 2024
argo-helm-charts
Public
Smarty
•0•0•0•2•Updated Dec 5, 2024Dec 5, 2024
platformics
Public
Codegen Python GraphQL Entity Framework
Python
•
MIT License
•0•3•14•13•Updated Nov 25, 2024Nov 25, 2024
czi-oss-training
Public
Training Materials for Good Open Source Citizenship
Creative Commons Attribution 4.0 International
•3•10•4•0•Updated Nov 25, 2024Nov 25, 2024
aws-oidc
Public
AWS OIDC Federation
Go
•
MIT License
•5•15•1•2•Updated Nov 25, 2024Nov 25, 2024
miniwdl-viz
Public
A library to decompose WDL files into a JSON/YAML, and create a mermaid flowchart
WDL
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MIT License
•0•3•0•3•Updated Nov 22, 2024Nov 22, 2024
napari-cryoet-data-portal
Public
A napari plugin to list, preview, and open data from the CZ Imaging Institute's CryoET Data Portal
Python
•
MIT License
•2•9•4•1•Updated Nov 22, 2024Nov 22, 2024
scRNA-python-workshop
Public archive
All the action is on the course webpage -->
Jupyter Notebook
•18•28•2•3•Updated Nov 12, 2024Nov 12, 2024