Repositories list

• SpeciesDistributionToolkit.jl

  Public
  Work with species distributions in Julia

  ecologybiodiversitybiogeography+ 4bioclimspecies-distribution-modelschelsaearthenv

  Julia

  •

  Other

  •2•14•13•2•Updated Nov 3, 2024Nov 3, 2024

• website

  Public
  Hugo sources for the lab's website

  hugoacademic-website

  TeX

  •

  GNU General Public License v3.0

  •8•7•0•0•Updated Oct 29, 2024Oct 29, 2024

• SpeciesInteractionNetworks.jl

  Public
  Work on species interaction networks in Julia

  Julia

  •

  Other

  •1•10•2•2•Updated Oct 13, 2024Oct 13, 2024

• Mangal.jl

  Public
  Get data*. Make science*. (*: only if it's about ecological networks tho)

  Julia

  •

  MIT License

  •3•9•1•0•Updated Oct 13, 2024Oct 13, 2024

• SpatialBoundaries.jl

  Public
  https://poisotlab.github.io/SpatialBoundaries.jl/

  Julia

  •

  MIT License

  •0•2•1•0•Updated Sep 18, 2024Sep 18, 2024

• BiodiversityObservationNetworks.jl

  Public
  Methods for optimizing the spatial location of biodiversity-observation-networks

  spatial-analysisbiodiversitysampling-methods+ 2conservation-biogeobon

  Julia

  •

  MIT License

  •0•2•6•2•Updated Sep 17, 2024Sep 17, 2024

• manuscript-template

  Public template
  TeX

  •10•49•1•1•Updated Sep 3, 2024Sep 3, 2024

• ms_network_prediction

  Public
  Making better network predictions through ML - done right!

  TeX

  •

  Other

  •2•1•1•1•Updated Sep 3, 2024Sep 3, 2024

• SpatialProbabilisticMetaweb

  Public
  Downscaling metawebs and playing with uncertainty in space. Published in Philosophical Transactions of the Royal Society B at https://doi.org/10.1098/rstb.2023.0166

  Julia

  •

  MIT License

  •0•2•0•0•Updated Aug 22, 2024Aug 22, 2024

• Omnomnomivores

  Public
  Sadly no omnomnomivores will be featured 😔

  Julia

  •

  MIT License

  •0•0•5•1•Updated Jul 5, 2024Jul 5, 2024

• ms_ncbitaxonomy_softwarenote

  Public
  https://poisotlab.github.io/ms_ncbitaxonomy_softwarenote/

  TeX

  •0•0•2•0•Updated May 31, 2024May 31, 2024

• ms_womble_ya_net

  Public
  Check out my gravel pit, A mystery unravel'n

  TeX

  •0•0•1•0•Updated Apr 4, 2024Apr 4, 2024

• ms_metaweb_perspectives

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

• ms_betacov_mapping

  Public
  TeX

  •0•1•0•0•Updated Sep 1, 2023Sep 1, 2023

• EcologicalNetworks.jl

  Public archive
  Everything you've never dreamed about measuring on ecological networks.

  networksecologyjulia

  Julia

  •

  Other

  •20•68•1•0•Updated Jun 23, 2023Jun 23, 2023

• NCBITaxonomy.jl

  Public
  Wrapper around the NCBI taxonomy files

  taxonomyncbi-taxonomybiodiversity+ 4ncbibiodiversity-dataivadoverena

  Julia

  •

  MIT License

  •2•7•1•1•Updated Mar 5, 2023Mar 5, 2023

• ms_networks_boundaries

  Public
  Where do networks stop?

  TeX

  •0•1•0•0•Updated Feb 28, 2023Feb 28, 2023

• manuscript-typesetter

  Public
  This is the code that builds the manuscripts

  Julia

  •

  MIT License

  •2•0•1•0•Updated Feb 27, 2023Feb 27, 2023

• ms_networkary_classifiers

  Public
  Guidelines for binary classifiers applied to ecological networks

  TeX

  •0•0•0•0•Updated Jan 27, 2023Jan 27, 2023

• EcologicalNetworksPlots.jl

  Public
  Networks. Boil 'em mash 'em stick 'em in a stew. And now, plot 'em.

  graph-algorithmsforce-layoutecology+ 2force-directed-graphsecological-network

  Julia

  •

  Other

  •0•4•1•2•Updated Dec 12, 2022Dec 12, 2022

• Fauxcurrences.jl

  Public archive
  Generates null models for species occurrence data

  biodiversityoccurrencesspecies-distribution-models

  Julia

  •

  MIT License

  •0•3•2•1•Updated Dec 11, 2022Dec 11, 2022

• SimpleSDMLayers.jl

  Public archive
  Simple layers for species distribution modeling and bioclimatic data

  rastergeotiffclimate-change+ 3bioclimspecies-distribution-modelslandcover

  Julia

  •

  MIT License

  •2•19•7•2•Updated Dec 11, 2022Dec 11, 2022

• GBIF.jl

  Public archive
  Functions and types to access GBIF data from Julia

  apiecologymacroecology+ 3biogeographyjuliagbif

  Julia

  •

  Other

  •4•19•0•1•Updated Dec 11, 2022Dec 11, 2022

• SimpleSDMDatasets.jl

  Public
  juliaraster-databiogeography+ 1species-distribution-models

  Julia

  •0•0•0•1•Updated Oct 30, 2022Oct 30, 2022

• BioEnergeticFoodWebs.jl

  Public
  A unified interface for simulations of the Bio-Energetic model on food webs

  ecological-modelsecologypopulation-dynamics+ 2biomassfood-webs

  Julia

  •

  Other

  •14•28•6•4•Updated Mar 16, 2022Mar 16, 2022

• ms_metaweb_transfer

  Public
  Transferring networks across space through network embedding

  TeX

  •2•0•0•0•Updated Feb 24, 2022Feb 24, 2022

• trefle

  Public
  LV-SVD application to Virionette

  R

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Feb 2, 2022Feb 2, 2022

• MetawebTransferLearning

  Public
  Julia

  •0•8•0•0•Updated Dec 23, 2021Dec 23, 2021

• ms_betadiversity_response

  Public
  TeX

  •0•0•0•0•Updated Dec 13, 2021Dec 13, 2021

• MangalSamplingStatus

  Public
  Automated reporting of the coverage of the mangal.io database of species interactions

  Julia

  •0•1•0•10•Updated Dec 3, 2021Dec 3, 2021