lib: set variant ID in VariantBuilder, #TASK-5576, #TASK-5564

opencb · Aug 5, 2024 · 2c7ddfb · 2c7ddfb
1 parent 4326fa3
commit 2c7ddfb
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/VariationBuilder.java b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/VariationBuilder.java
@@ -83,6 +83,7 @@ private void parseVcf() throws IOException {
                 Iterator<Variant> iterator = variantVcfReader.iterator();
                 while (iterator.hasNext()) {
                     Variant variant = iterator.next();
+                    variant.setId(variant.toStringSimple());
                     fileSerializer.serialize(variant, VARIATION_CHR_PREFIX + variant.getChromosome());
                 }
                 variantVcfReader.close();