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Prepare new development branch release-6.2.x #202

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Prepare new development branch release-6.2.x

Prepare new development branch release-6.2.x #202

Triggered via push July 17, 2024 08:55
@juanfeSanahujajuanfeSanahuja
pushed 25b9dd3
release-6.2.x
Status Failure
Total duration 21m 21s
Artifacts 1

develop.yml

on: push
build  /  Build Java app
1m 10s
build / Build Java app
test  /  Test and push Sonar analysis
19m 51s
test / Test and push Sonar analysis
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
deploy-maven  /  Deploy to Maven and GitHub Packages
deploy-maven / Deploy to Maven and GitHub Packages
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41 errors
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryStartOutOfLeftBound: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceChromosomeNotPresent: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryEndOutOfRightBound: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryStartEndOutOfRightBound: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
GeneMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java#L76
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQuery(GeneMongoDBAdaptorTest.java:76)
GeneMongoDBAdaptorTest.testQueryId: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java#L56
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQueryId(GeneMongoDBAdaptorTest.java:56)
GeneMongoDBAdaptorTest.testConstraints: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java#L128
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testConstraints(GeneMongoDBAdaptorTest.java:128)
GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L84
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent(GenomeMongoDBAdaptorTest.java:84)
GenomeMongoDBAdaptorTest.getChromosomeInfo: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L57
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getChromosomeInfo(GenomeMongoDBAdaptorTest.java:57)
GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L92
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds(GenomeMongoDBAdaptorTest.java:92)
GenomeMongoDBAdaptorTest.getGenomicSequence: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L68
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getGenomicSequence(GenomeMongoDBAdaptorTest.java:68)
GenomeMongoDBAdaptorTest.testGetCytoband: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L111
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGetCytoband(GenomeMongoDBAdaptorTest.java:111)
PharmacogenomicsMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/PharmacogenomicsMongoDBAdaptorTest.java#L67
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQuery(PharmacogenomicsMongoDBAdaptorTest.java:67)
PharmacogenomicsMongoDBAdaptorTest.testQueryName: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/PharmacogenomicsMongoDBAdaptorTest.java#L50
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQueryName(PharmacogenomicsMongoDBAdaptorTest.java:50)
ProteinMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/ProteinMongoDBAdaptorTest.java#L51
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.ProteinMongoDBAdaptorTest.testQuery(ProteinMongoDBAdaptorTest.java:51)
TranscriptMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/TranscriptMongoDBAdaptorTest.java#L49
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.TranscriptMongoDBAdaptorTest.testQuery(TranscriptMongoDBAdaptorTest.java:49)
VariantAnnotationCalculatorTest.org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L54
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.<init>(VariantAnnotationCalculatorTest.java:54)
XRefMongoDBAdaptorTest.queryTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/XRefMongoDBAdaptorTest.java#L46
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.XRefMongoDBAdaptorTest.queryTest(XRefMongoDBAdaptorTest.java:46)
VariantManagerTest.org.opencb.cellbase.lib.variant.VariantManagerTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/variant/VariantManagerTest.java#L49
java.lang.NullPointerException at org.opencb.cellbase.lib.variant.VariantManagerTest.<init>(VariantManagerTest.java:49)
HgvsCalculatorTest.org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/variant/hgvs/HgvsCalculatorTest.java#L37
java.lang.NullPointerException at org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest.<init>(HgvsCalculatorTest.java:37)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryStartOutOfLeftBound: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceChromosomeNotPresent: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryEndOutOfRightBound: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryStartEndOutOfRightBound: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java#L34
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
GeneMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java#L76
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQuery(GeneMongoDBAdaptorTest.java:76)
GeneMongoDBAdaptorTest.testQueryId: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java#L56
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQueryId(GeneMongoDBAdaptorTest.java:56)
GeneMongoDBAdaptorTest.testConstraints: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java#L128
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testConstraints(GeneMongoDBAdaptorTest.java:128)
GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L84
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent(GenomeMongoDBAdaptorTest.java:84)
GenomeMongoDBAdaptorTest.getChromosomeInfo: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L57
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getChromosomeInfo(GenomeMongoDBAdaptorTest.java:57)
GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L92
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds(GenomeMongoDBAdaptorTest.java:92)
GenomeMongoDBAdaptorTest.getGenomicSequence: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L68
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getGenomicSequence(GenomeMongoDBAdaptorTest.java:68)
GenomeMongoDBAdaptorTest.testGetCytoband: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java#L111
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGetCytoband(GenomeMongoDBAdaptorTest.java:111)
PharmacogenomicsMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/PharmacogenomicsMongoDBAdaptorTest.java#L67
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQuery(PharmacogenomicsMongoDBAdaptorTest.java:67)
PharmacogenomicsMongoDBAdaptorTest.testQueryName: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/PharmacogenomicsMongoDBAdaptorTest.java#L50
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQueryName(PharmacogenomicsMongoDBAdaptorTest.java:50)
ProteinMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/ProteinMongoDBAdaptorTest.java#L51
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.ProteinMongoDBAdaptorTest.testQuery(ProteinMongoDBAdaptorTest.java:51)
TranscriptMongoDBAdaptorTest.testQuery: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/TranscriptMongoDBAdaptorTest.java#L49
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.TranscriptMongoDBAdaptorTest.testQuery(TranscriptMongoDBAdaptorTest.java:49)
VariantAnnotationCalculatorTest.org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L54
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.<init>(VariantAnnotationCalculatorTest.java:54)
XRefMongoDBAdaptorTest.queryTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/XRefMongoDBAdaptorTest.java#L46
java.lang.NullPointerException at org.opencb.cellbase.lib.impl.core.XRefMongoDBAdaptorTest.queryTest(XRefMongoDBAdaptorTest.java:46)
VariantManagerTest.org.opencb.cellbase.lib.variant.VariantManagerTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/variant/VariantManagerTest.java#L49
java.lang.NullPointerException at org.opencb.cellbase.lib.variant.VariantManagerTest.<init>(VariantManagerTest.java:49)
HgvsCalculatorTest.org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest: cellbase-lib/src/test/java/org/opencb/cellbase/lib/variant/hgvs/HgvsCalculatorTest.java#L37
java.lang.NullPointerException at org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest.<init>(HgvsCalculatorTest.java:37)
test / Test and push Sonar analysis
There were 20 failed tests

Artifacts

Produced during runtime
Name Size
build-folder Expired
208 MB