test: sort functional score list for test variant annotation comparis… #262

	name: CellBase Develop workflow

	on:
	push:
	branches:
	- TASK-*
	workflow_dispatch:

	jobs:
	build:
	uses: opencb/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop

	test:
	uses: ./.github/workflows/test-analysis.yml
	needs: build
	secrets: inherit
	with:
	report_context: development
	report_dir: ${{ github.ref_name }}/cellbase/${{ github.sha }}

	deploy-docker:
	uses: opencb/java-common-libs/.github/workflows/deploy-docker-hub-workflow.yml@develop
	needs: test
	with:
	cli: python3 ./build/cloud/docker/docker-build.py push --images base --tag ${{ github.ref_name }}
	secrets: inherit

	deploy-maven:
	uses: opencb/java-common-libs/.github/workflows/deploy-maven-repository-workflow.yml@develop
	needs: [ build, test ]
	with:
	maven_opts: -Dcheckstyle.skip -DCELLBASE.WAR.NAME=cellbase
	if: contains( needs.build.outputs.version ,'TASK')
	secrets: inherit

	#The following jobs are to see that the previous if does not fail and that the maven deploy is executed because it is true
	snapshot-version:
	name: Check SNAPSHOT version
	needs: [ build, test ]
	if: contains(needs.build.outputs.version ,'SNAPSHOT')
	runs-on: ubuntu-22.04
	steps:
	- name: test-version-from-check
	run: echo "Project version is " ${{ needs.build.outputs.version }}

	task-version:
	name: Check TASK version
	needs: [ build, test ]
	if: contains(needs.build.outputs.version ,'TASK')
	runs-on: ubuntu-22.04
	steps:
	- name: test-version-from-check
	run: echo "Project version is " ${{ needs.build.outputs.version }}

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