bringing pyright configuration into the pyproject.toml

pyproject.toml

@@ -3,47 +3,47 @@ name = "oneroof"
 version = "0.1.0"
 description = "Base-, Variant-, and Consensus-calling under One Proverbial Roof. Work in progress!"
 authors = [
- { name = "Nicholas R. Minor", email = "[email protected]" },
- { name = "Andrew J. Lail", email = "[email protected]" },
- { name = "Annabelle Kalweit", email = "[email protected]" },
+  { name = "Nicholas R. Minor", email = "[email protected]" },
+  { name = "Andrew J. Lail", email = "[email protected]" },
+  { name = "Annabelle Kalweit", email = "[email protected]" },
 ]
 requires-python = ">= 3.10"
 keywords = [
- "science",
- "biology",
- "research",
- "bioinformatics",
- "sequencing",
- "genomics",
- "virus",
- "SARS-CoV-2",
- "H5N1",
- "influenze",
- "haplotyping",
+  "science",
+  "biology",
+  "research",
+  "bioinformatics",
+  "sequencing",
+  "genomics",
+  "virus",
+  "SARS-CoV-2",
+  "H5N1",
+  "influenze",
+  "haplotyping",
 ]
 classifiers = [
- "Development Status :: 3 - Alpha",
+  "Development Status :: 3 - Alpha",
 
- "Intended Audience :: Science/Research",
- "Topic :: Scientific/Engineering :: Bio-Informatics",
+  "Intended Audience :: Science/Research",
+  "Topic :: Scientific/Engineering :: Bio-Informatics",
 
- "License :: OSI Approved :: MIT License",
+  "License :: OSI Approved :: MIT License",
 
- "Programming Language :: Python :: 3",
- "Programming Language :: Python :: 3.10",
- "Programming Language :: Python :: 3.11",
- "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
 ]
 dependencies = [
- "polars-lts-cpu",
- "xlsxwriter",
- "xlsx2csv",
- "biopython",
- "pysam",
- "marimo",
- "numpy",
- "scipy",
- "paramiko",
+  "polars-lts-cpu",
+  "xlsxwriter",
+  "xlsx2csv",
+  "biopython",
+  "pysam",
+  "marimo",
+  "numpy",
+  "scipy",
+  "paramiko",
 ]
 
 [build-system]
@@ -53,6 +53,9 @@ build-backend = "setuptools.build_meta:__legacy__"
 [tool.setuptools]
 py-modules = ["bin"]
 
+[project.scripts]
+"oneroof" = "bin.__main__:main"
+
 [tool.pixi.project]
 channels = ["conda-forge", "bioconda", "anaconda"]
 platforms = ["osx-64", "linux-64"]
@@ -90,20 +93,21 @@ cffi = ">=1.15.0,<1.17.0"
 
 [tool.uv]
 dev-dependencies = [
- "ipykernel>=6.29.5",
- "ipython>=8.12.3",
- "jupyter>=0.6.4",
- "just>=0.8.162",
- "mamba>=0.11.3",
- "marimo[sql]>=0.8.14",
- "pip>=24.2",
- "pre-commit>=3.8.0",
- "pytest>=8.3.3",
- "quarto>=0.1.0",
- "ruff>=0.6.4",
- "tox>=4.18.1",
+  "ipykernel>=6.29.5",
+  "ipython>=8.12.3",
+  "jupyter>=0.6.4",
+  "just>=0.8.162",
+  "mamba>=0.11.3",
+  "marimo[sql]>=0.8.14",
+  "pip>=24.2",
+  "pre-commit>=3.8.0",
+  "pytest>=8.3.3",
+  "quarto>=0.1.0",
+  "ruff>=0.6.4",
+  "tox>=4.18.1",
 ]
 compile-bytecode = true
 
-[project.scripts]
-"oneroof" = "bin.__main__:main"
+[tool.pyright]
+venvPath = "."
+venv = ".venv"