updating to account for breaking change in pixi clean cache cli

Dockerfile

@@ -56,7 +56,7 @@ RUN cd $HOME && PIXI_ARCH=x86_64 curl -fsSL https://pixi.sh/install.sh | bash
 ENV PATH=$PATH:$HOME/.pixi/bin
 
 # 4) install everything else with pixi
-RUN cd $HOME && pixi clean cache --yes && pixi install --verbose --color=always --frozen && pixi clean cache --yes
+RUN cd $HOME && pixi install --verbose --color=always --frozen && pixi clean cache --assume-yes
 
 # 5) modify the shell config so that each container launches within the pixi env
 RUN echo "export PATH=$PATH:$HOME/.pixi/envs/default/bin" >> $HOME/.bashrc

justfile

@@ -42,11 +42,11 @@ setup-env:
 
 # Build the Docker image for the pipeline locally.
 docker-build:
- docker build -t nrminor/dorado-and-friends:v0.2.2 .
+ docker build -t nrminor/dorado-and-friends:v0.2.3 .
 
 # Push the docker image to Docker Hub (requires N.R. Minor's login credentials).
 docker-push:
- docker push nrminor/dorado-and-friends:v0.2.2
+ docker push nrminor/dorado-and-friends:v0.2.3
 
 # Run both docker recipes in sequence
 docker: docker-build docker-push

nextflow.config

@@ -200,7 +200,7 @@ profiles {
  singularity.enabled = false
  conda.enabled = false
 
- process.container = "nrminor/dorado-and-friends:v0.2.2"
+ process.container = "nrminor/dorado-and-friends:v0.2.3"
 
  }
 
@@ -210,7 +210,7 @@ profiles {
  singularity.enabled = false
  conda.enabled = false
 
- process.container = "nrminor/dorado-and-friends:v0.2.2"
+ process.container = "nrminor/dorado-and-friends:v0.2.3"
 
  }
 
@@ -220,7 +220,7 @@ profiles {
  docker.enabled = false
  conda.enabled = false
 
- process.container = "docker://nrminor/dorado-and-friends:v0.2.2"
+ process.container = "docker://nrminor/dorado-and-friends:v0.2.3"
 
  }
 
@@ -230,7 +230,7 @@ profiles {
  docker.enabled = false
  conda.enabled = false
 
- process.container = "docker://nrminor/dorado-and-friends:v0.2.2"
+ process.container = "docker://nrminor/dorado-and-friends:v0.2.3"
 
  }