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Update bowtie2_assembly_align.nf #751

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Update bowtie2_assembly_align.nf #751

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amizeranschi
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Make sure the timestamps of the BAM file and its index are in proper order. Should fix #750

@amizeranschi
Update bowtie2_assembly_align.nf
faadc34 
Makes sure the timestamps of the BAM file and its index are in proper order. Should fix #750
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.1.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

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github-actions bot commented Jan 22, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit faadc34

+| ✅ 327 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file [TODO: try and test using for --host_fasta and --host_genome]
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.1.1
  • Run at 2025-01-22 07:20:21

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jfy133 commented Jan 22, 2025

Unfortunately this doesn't solve the issue reported.

See description herE: #750 (comment)

@jfy133 jfy133 closed this Jan 22, 2025
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@amizeranschi @nf-core-bot @jfy133