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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 378 218

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 146 67

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 227 repositories
  • facetsHeatmap Public

    Visualization of copy number profile distributions in a cohort

    mskcc/facetsHeatmap’s past year of commit activity
    R 0 0 0 0 Updated Dec 27, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Dec 27, 2024
  • argos-bam Public

    The CWL bam generator for ARGOS, separated into its own repo

    mskcc/argos-bam’s past year of commit activity
    Common Workflow Language 0 0 0 0 Updated Dec 27, 2024
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 18 Updated Dec 26, 2024
  • smile-databricks-gateway Public
    mskcc/smile-databricks-gateway’s past year of commit activity
    Go 0 AGPL-3.0 0 0 0 Updated Dec 24, 2024
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 1 1 (1 issue needs help) 31 Updated Dec 24, 2024
  • smile-message-publisher Public

    Spring Boot LIMS SampleMetadata publisher framework

    mskcc/smile-message-publisher’s past year of commit activity
    Java 0 AGPL-3.0 4 0 1 Updated Dec 19, 2024
  • LimsRest Public

    the restful service used by the IGO LIMS

    mskcc/LimsRest’s past year of commit activity
    Java 2 2 5 4 Updated Dec 19, 2024
  • beagle_cli Public

    Beagle API Command Line Utility

    mskcc/beagle_cli’s past year of commit activity
    Python 0 1 8 3 Updated Dec 19, 2024
  • smile-server Public
    mskcc/smile-server’s past year of commit activity
    Java 2 4 72 1 Updated Dec 18, 2024
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