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27 Open 183 Closed
27 Open 183 Closed
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Issues list

Map to MONDO in disease benchmarking
#367 opened Nov 5, 2024 by yaseminbridges
@yaseminbridges
Account for compound het variants
#363 opened Oct 7, 2024 by yaseminbridges
1
@yaseminbridges
generatemakefile.sh j2 dependency
#362 opened Sep 27, 2024 by AO33
@souzadevinicius
1
Versioning plan of the corpora
#350 opened Aug 21, 2024 by yaseminbridges
@souzadevinicius
1
Disease prioritization results benchmarking from different disease ontologies
#349 opened Aug 9, 2024 by AO33
@yaseminbridges
5
Problems using pheval
#347 opened Jul 15, 2024 by seoanezonjic
@souzadevinicius @yaseminbridges
19
SOP for pheval releases
#341 opened Jun 13, 2024 by matentzn
@souzadevinicius
Add synthetic corpus
#339 opened Jun 12, 2024 by yaseminbridges
1
@yaseminbridges
Implement a PhEval Utils method for SEMSIM to SQL conversion
#296 opened Feb 8, 2024 by souzadevinicius
@souzadevinicius
Doc page: How to create a new PhEval release
#270 opened Jan 3, 2024 by souzadevinicius
@souzadevinicius
Create pheval.experimental runner for cross species testing
#207 opened Nov 1, 2023 by matentzn
@kcortes133
Test the WNATO hypothesis
#206 opened Nov 1, 2023 by matentzn
3 tasks
@souzadevinicius @kcortes133
1
Semsim comparison Heatmap plot should have a second parameter "-t/--terms" which allows restricting to specific terms for the heatmap.
#189 opened Aug 16, 2023 by souzadevinicius
@souzadevinicius
Create new pheval-utils function to generate semsim score distribution plots
#187 opened Aug 16, 2023 by souzadevinicius
1
@souzadevinicius
1
Please manage PhEval board
#174 opened Jul 4, 2023 by matentzn
4 of 6 tasks
@souzadevinicius @yaseminbridges
OntoGPT corpus to corpora
#156 opened Jun 13, 2023 by souzadevinicius
2 tasks
@souzadevinicius
Test Phenomizer or Exomiser-minus-variants on phenopackets
#155 opened Jun 12, 2023 by souzadevinicius
2 tasks
@souzadevinicius @yaseminbridges
Implementing pairwise agreement stats
#44 opened Jan 20, 2023 by yaseminbridges
2 tasks
@yaseminbridges
Make community standards all green
#41 opened Jan 10, 2023 by souzadevinicius
@souzadevinicius
Create a generic LinkML model for VP results
#36 opened Dec 1, 2022 by matentzn
@matentzn
Provide list of current Variant Prioritisation tools that might be suitable for PhEval long term
#35 opened Dec 1, 2022 by matentzn
@yaseminbridges
Study the impact of HPO versions on variant prioritisation performance use case
#31 opened Nov 24, 2022 by matentzn
Create style guide for CLI
#23 opened Nov 17, 2022 by matentzn
COnsider masking
#9 opened Oct 7, 2022 by matentzn
Document the key metrics from the exomiser outputs to track
#8 opened Oct 6, 2022 by matentzn
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