v0.2.2

What's Changed

• Add Bootstrap function to app; fix some parsing bugs by @caufieldjh in #94
• Update build workflow for Pypi; fixes for pubmed tests by @caufieldjh in #97
• Fix #99 by @caufieldjh in #101
• #81 Venomx integration by @iQuxLE in #96
• Catch errors from missing metadata by @caufieldjh in #105
• Add workaround for updating default model metadata by @caufieldjh in #107
• Add ESS-DIVE to interface by @caufieldjh in #103
• Remove protobuf pin by @caufieldjh in #109

Full Changelog: v0.2.1...v0.2.2

v0.2.1

What's Changed

• Change name from curate-gpt to curategpt by @caufieldjh in #92
• Rename main module from curate_gpt to curategpt by @caufieldjh in #93

Full Changelog: v0.2.0...v0.2.1

v0.2.0

What's Changed

• Added docs dependencies and cruft update by @hrshdhgd in #29
• Adding --jsonpath option to index command. by @cmungall in #31
• Adding venomx dependency by @cmungall in #22
• Allow gpt-4o by @cmungall in #38
• BYOE bring your own embeddings by @justaddcoffee in #35
• Auto-KB: Adding more automation functions by @cmungall in #41
• duckdb_adapter implementation by @iQuxLE in #44
• uniprot loader by @cmungall in #43
• dragon-ai workflows by @cmungall in #47
• fixes #48 by @cmungall in #49
• Fix #50 by @caufieldjh in #51
• fixes #45, full downstream compatability duckdb and chromadb by @iQuxLE in #53
• Fix issue with parsing errors in Mapping agent by @caufieldjh in #54
• Duckdbadapter implementation by @iQuxLE in #55
• Getting correct vector dimensions for search by @cmungall in #56
• Fixes for retrieving GitHub issues by @caufieldjh in #61
• Add config to each pydantic BaseModel; fix #59 by @caufieldjh in #60
• DuckDBAdapter: Batch OpenAI calls by @iQuxLE in #62
• test suite fixes by @cmungall in #63
• improved --path handling in CLI #64 fix ef and dim selection #65 by @iQuxLE in #66
• linting and consolidate poetry by @iQuxLE in #72
• Prevent dimension errors in search via duckdb by @iQuxLE in #75
• improve batching and minimise API requests when embedding docs in duckdb_adapter by @iQuxLE in #70
• Openai api key decorator - fix whole test suite by @iQuxLE in #76
• Optimize linting setup - utilize solely Ruff by @iQuxLE in #78
• Add support for pushing embeddings/metadata to huggingface by @justaddcoffee in #79
• Workaround for segfaults with duckdb 1.1.0 by @caufieldjh in #83
• Improve handling of Markdown parsing errors by @caufieldjh in #82
• new PullRequest class in src/curate_gpt/wrappers/general/github_wrapper.py by @turbomam in #86
• Fixing tests with provided OPENAI_API_KEY by @iQuxLE in #85
• Updates for v0.2.0 by @caufieldjh in #88

New Contributors

• @iQuxLE made their first contribution in #44
• @caufieldjh made their first contribution in #51
• @turbomam made their first contribution in #86

Full Changelog: v0.1.4...v0.2.0

v0.1.4

What's Changed

• removing replicate by @realmarcin in #7
• Format code using tox by @hrshdhgd in #12
• Activate Bugbear rules by @hrshdhgd in #14
• Change GH actions python version by @justaddcoffee in #17
• Added documentation on using other models via litellm. by @cmungall in #16

New Contributors

• @realmarcin made their first contribution in #7
• @hrshdhgd made their first contribution in #12
• @justaddcoffee made their first contribution in #17

Full Changelog: v0.1.3...v0.1.4

v0.1.3

Full Changelog: v0.1.2...v0.1.3

v0.1.2

What's Changed

• Adding a reusabledata.org wrapper by @cmungall in #3
• Adding a wrapper for mediadive and bacdive by @cmungall in #5
• Update docs by @oneilsh in #6

New Contributors

• @oneilsh made their first contribution in #6

Full Changelog: v0.1.1...v0.1.2

v0.1.1

Full Changelog: v0.1.0...v0.1.1

v0.1.0

What's Changed

• initial commit by @cmungall in #1

New Contributors

• @cmungall made their first contribution in #1

Full Changelog: https://github.com/monarch-initiative/curate-gpt/commits/v0.1.0