Pinned

1. cloning cloning Public

   Python implementation of the cloning algorithm for the computation of large deviation functions.

   Jupyter Notebook

2. gLoop gLoop Public

   Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5

   R 1

3. rancovr rancovr Public

   rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing

   R

4. dTASEP-fit dTASEP-fit Public

   Software supporting M. Cavallaro et al. "Bayesian inference of polymerase dynamics over the exclusion process" (2021) arXiv/2109.05100

   Python

5. Inverse-Laplace-transform Inverse-Laplace-transform Public

   C link to FORTRAN 77 routine 662 for the inversion of Laplace transforms

   Fortran 1

6. outbreak-detection outbreak-detection Public

   Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https…

   R