Improved tests and removed snakemake pipelines

[mazzalab]

Snakemake pipelines will be maintained locally till move to Nextflow will be complete

[codecov-commenter]

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Codecov Report

Attention: Patch coverage is 17.02703% with 307 lines in your changes missing coverage. Please review.

Project coverage is 37.35%. Comparing base (8123253) to head (00b5601).

Files with missing lines	Patch %	Lines
fastqwiper/summary_gather.py	0.00%	105 Missing ⚠️
fastqwiper/fastq_scatter.py	0.00%	92 Missing ⚠️
fastqwiper/fastq_gather.py	0.00%	73 Missing ⚠️
fastqwiper/wipertools.py	0.00%	19 Missing ⚠️
fastqwiper/fastq_wiper.py	75.36%	17 Missing ⚠️
fastqwiper/wipertool_abstract.py	91.66%	1 Missing ⚠️

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Additional details and impacted files

@@             Coverage Diff             @@
##             main      #30       +/-   ##
===========================================
+ Coverage   20.46%   37.35%   +16.88%     
===========================================
  Files           5        6        +1     
  Lines         386      522      +136     
===========================================
+ Hits           79      195      +116     
- Misses        307      327       +20     

Flag	Coverage Δ
pytest	37.35% <17.02%> (+16.88%)	⬆️

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