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Lab. de Diversidade Genética Humana (LDGH)

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  1. NAToRA_Public NAToRA_Public Public

    NAToRA toolkit consists of a series of scripts to execute kinship control analyses as described in the manuscript by Leal et al. 2022, entitled "NAToRA, a relatedness-pruning method to minimize the…

    Python 4 1

  2. Genotype-Imputation-public Genotype-Imputation-public Public

    Public description of LDGH Genotype Imputation v.2. pipeline developed in Phyton by Thiago Peixoto Leal, with the collaboration by Nathalia M. Araujo, Marilia Scliar and Ricardo Lyra. The user may …

    1

  3. Targeted_Sequencing_Pipeline Targeted_Sequencing_Pipeline Public

    Perl

  4. Genotype_Correction Genotype_Correction Public

    Python

  5. Population-Structure Population-Structure Public

    Population Structure scripts

  6. MosaiQC-public MosaiQC-public Public template

    SmartCleaning (now called MosaiQC) is a script developed by Thiago Peixoto Leal to clean and perform QC of genotyping array data using PLINK. It automates the different steps. If interested in usin…

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Showing 10 of 11 repositories
  • PipelineNGSpublic Public

    Pipeline for variant calling in NGS data based on GATK's best practices.

    ldgh/PipelineNGSpublic’s past year of commit activity
    0 0 0 0 Updated Jun 21, 2024
  • MosaiQC-public Public template

    SmartCleaning (now called MosaiQC) is a script developed by Thiago Peixoto Leal to clean and perform QC of genotyping array data using PLINK. It automates the different steps. If interested in using SmartCleaning, contact the LDGH/Mosaico Translational Genomics team ([email protected] )

    ldgh/MosaiQC-public’s past year of commit activity
    0 0 0 0 Updated Jan 23, 2024
  • .github Public
    ldgh/.github’s past year of commit activity
    0 0 0 0 Updated Mar 13, 2023
  • NAToRA_Public Public

    NAToRA toolkit consists of a series of scripts to execute kinship control analyses as described in the manuscript by Leal et al. 2022, entitled "NAToRA, a relatedness-pruning method to minimize the loss of dataset size in genetic and omics analyses"

    ldgh/NAToRA_Public’s past year of commit activity
    Python 4 1 0 0 Updated Jan 12, 2023
  • 3A-public Public
    ldgh/3A-public’s past year of commit activity
    0 0 0 0 Updated Oct 11, 2022
  • Genotype-Imputation-public Public

    Public description of LDGH Genotype Imputation v.2. pipeline developed in Phyton by Thiago Peixoto Leal, with the collaboration by Nathalia M. Araujo, Marilia Scliar and Ricardo Lyra. The user may choose to use SHAPEIT2 or SHAPEIT4 for haplotype inferences, and IMPUTE2 or IMPUTE4 for imputation. For further details or if you are interested in us…

    ldgh/Genotype-Imputation-public’s past year of commit activity
    1 0 0 0 Updated Aug 31, 2022
  • CNVice Public
    ldgh/CNVice’s past year of commit activity
    R 0 0 0 0 Updated Aug 23, 2022
  • NAToRASimulator Public
    ldgh/NAToRASimulator’s past year of commit activity
    Python 0 0 0 0 Updated Mar 30, 2022
  • Population-Structure Public

    Population Structure scripts

    ldgh/Population-Structure’s past year of commit activity
    0 0 0 0 Updated Sep 6, 2018
  • Genotype_Correction Public
    ldgh/Genotype_Correction’s past year of commit activity
    Python 0 0 0 0 Updated May 30, 2018
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