ci(shfmt): add shfmt code formatting checks (reanahub#838)

Also adds basic `.editorconfig` configuration for various languages
since this is the primary way how to configure `shfmt` shell script
source code formatting with respect to indentation.

Closes reanahub#836

.editorconfig

@@ -0,0 +1,15 @@
+root = true
+
+[*]
+charset = utf-8
+end_of_line = lf
+indent_size = 4
+indent_style = space
+insert_final_newline = true
+trim_trailing_whitespace=true
+
+[*.{css,html,js,json,scss,yaml,yml}]
+indent_size=2
+
+[*.go]
+indent_style = tab

.github/workflows/ci.yml

@@ -221,3 +221,14 @@ jobs:
         run: |
           npm install prettier --global
           ./run-tests.sh --check-prettier
+
+  lint-shfmt:
+    runs-on: ubuntu-24.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Check shell script code fomatting
+        run: |
+          sudo apt-get install shfmt
+          ./run-tests.sh --check-shfmt

run-tests.sh

@@ -9,7 +9,7 @@
 set -o errexit
 set -o nounset
 
-check_commitlint () {
+check_commitlint() {
     from=${2:-master}
     to=${3:-HEAD}
     pr=${4:-[0-9]+}
@@ -31,7 +31,7 @@ check_commitlint () {
         # (iii) check absence of merge commits in feature branches
         if [ "$commit_number_of_parents" -gt 1 ]; then
             if echo "$commit_title" | grep -qP "^chore\(.*\): merge "; then
-                break  # skip checking maint-to-master merge commits
+                break # skip checking maint-to-master merge commits
             else
                 echo "✖   Merge commits are not allowed in feature branches: $commit_title"
                 found=1
@@ -43,51 +43,55 @@ check_commitlint () {
     fi
 }
 
-check_shellcheck () {
+check_shellcheck() {
     find . -name "*.sh" -exec shellcheck {} \+
 }
 
-check_black () {
+check_black() {
     black --check .
 }
 
-check_flake8 () {
+check_flake8() {
     flake8 .
 }
 
-check_pydocstyle () {
+check_pydocstyle() {
     pydocstyle reana
 }
 
-check_manifest () {
+check_manifest() {
     check-manifest
 }
 
-check_sphinx () {
+check_sphinx() {
     sphinx-build -qnNW docs docs/_build/html
 }
 
-check_pytest () {
+check_pytest() {
     pytest
 }
 
-check_helm () {
+check_helm() {
     helm lint helm/reana
 }
 
-check_yamllint () {
+check_yamllint() {
     yamllint .
 }
 
-check_markdownlint () {
+check_markdownlint() {
     markdownlint-cli2 "**/*.md"
 }
 
-check_prettier () {
+check_prettier() {
     prettier -c .
 }
 
-check_all () {
+check_shfmt() {
+    shfmt -d .
+}
+
+check_all() {
     check_commitlint
     check_shellcheck
     check_black
@@ -100,6 +104,7 @@ check_all () {
     check_yamllint
     check_markdownlint
     check_prettier
+    check_shfmt
 }
 
 if [ $# -eq 0 ]; then
@@ -109,17 +114,18 @@ fi
 
 arg="$1"
 case $arg in
-    --check-commitlint) check_commitlint "$@";;
-    --check-shellcheck) check_shellcheck;;
-    --check-black) check_black;;
-    --check-flake8) check_flake8;;
-    --check-pydocstyle) check_pydocstyle;;
-    --check-manifest) check_manifest;;
-    --check-sphinx) check_sphinx;;
-    --check-pytest) check_pytest;;
-    --check-helm) check_helm;;
-    --check-yamllint) check_yamllint;;
-    --check-markdownlint) check_markdownlint;;
-    --check-prettier) check_prettier;;
-    *) echo "[ERROR] Invalid argument '$arg'. Exiting." && exit 1;;
+--check-commitlint) check_commitlint "$@" ;;
+--check-shellcheck) check_shellcheck ;;
+--check-black) check_black ;;
+--check-flake8) check_flake8 ;;
+--check-pydocstyle) check_pydocstyle ;;
+--check-manifest) check_manifest ;;
+--check-sphinx) check_sphinx ;;
+--check-pytest) check_pytest ;;
+--check-helm) check_helm ;;
+--check-yamllint) check_yamllint ;;
+--check-markdownlint) check_markdownlint ;;
+--check-prettier) check_prettier ;;
+--check-shfmt) check_shfmt ;;
+*) echo "[ERROR] Invalid argument '$arg'. Exiting." && exit 1 ;;
 esac

scripts/create-admin-user.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 #
 # This file is part of REANA.
-# Copyright (C) 2020 CERN.
+# Copyright (C) 2020, 2024 CERN.
 #
 # REANA is free software; you can redistribute it and/or modify it
 # under the terms of the MIT License; see LICENSE file for more details.
@@ -19,8 +19,7 @@ admin_email=$3
 admin_password=$4
 
 # Wait for database to be ready
-while [ "0" -ne "$(kubectl -n "${kubernetes_namespace}" exec "deployment/${instance_name}-db" -- pg_isready -U reana -h 127.0.0.1 -p 5432 &> /dev/null && echo $? || echo 1)" ]
-do
+while [ "0" -ne "$(kubectl -n "${kubernetes_namespace}" exec "deployment/${instance_name}-db" -- pg_isready -U reana -h 127.0.0.1 -p 5432 &>/dev/null && echo $? || echo 1)" ]; do
     echo "Waiting for deployment/${instance_name}-db to be ready..."
     sleep 5
 done
@@ -30,16 +29,15 @@ kubectl -n "${kubernetes_namespace}" exec "deployment/${instance_name}-server" -
 
 # Create admin user
 if ! admin_access_token=$(kubectl -n "${kubernetes_namespace}" exec "deployment/${instance_name}-server" -c rest-api -- \
-    flask reana-admin create-admin-user --email "${admin_email}" --password "${admin_password}")
-then
+    flask reana-admin create-admin-user --email "${admin_email}" --password "${admin_password}"); then
     # Output failures
     echo "${admin_access_token}"
     exit 1
 fi
 
 # Add token to secrets
 kubectl -n "${kubernetes_namespace}" create secret generic "${instance_name}"-admin-access-token \
-      --from-literal=ADMIN_ACCESS_TOKEN="${admin_access_token}"
+    --from-literal=ADMIN_ACCESS_TOKEN="${admin_access_token}"
 
 # Success!
 echo "Success! You may now set the following environment variables:"

scripts/prefetch-images.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 #
 # This file is part of REANA.
-# Copyright (C) 2020, 2021, 2022, 2023 CERN.
+# Copyright (C) 2020, 2021, 2022, 2023, 2024 CERN.
 #
 # REANA is free software; you can redistribute it and/or modify it
 # under the terms of the MIT License; see LICENSE file for more details.
@@ -19,8 +19,7 @@ for image in \
     docker.io/reanahub/reana-workflow-engine-cwl:0.9.3 \
     docker.io/reanahub/reana-workflow-engine-serial:0.9.3 \
     docker.io/reanahub/reana-workflow-engine-snakemake:0.9.3 \
-    docker.io/reanahub/reana-workflow-engine-yadage:0.9.4 \
-    ; do
-        docker pull $image
-        kind load docker-image $image
+    docker.io/reanahub/reana-workflow-engine-yadage:0.9.4; do
+    docker pull $image
+    kind load docker-image $image
 done