Dockerfile (#69)

Dockerfile

@@ -0,0 +1,86 @@
+FROM condaforge/mambaforge:latest
+
+LABEL maintainer=""
+LABEL version="0.0.1"
+
+# make tmp accessible 
+RUN chmod -R 777 /tmp
+
+# Set the timezone
+ENV TZ=Europe/Berlin
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
+
+# Install utils and dependencies for pyinterp
+RUN apt update && apt install -y \
+ tmux \
+ htop \
+ nano \
+ zip \
+ git \
+ cmake \
+ g++ \
+ libblas-dev \
+ libgsl-dev \
+ libeigen3-dev\
+ libgtest-dev \
+ python3-numpy && \
+ echo 'set -g mouse on' > ~/.tmux.conf
+
+# Install packages with mamba
+RUN mamba install -y -c conda-forge \
+ python=3.10 \
+ 'boost>=1.79' \
+ pyinterp \
+ matplotlib \
+ cartopy \
+ hvplot \
+ arviz \
+ metpy \
+ 'pandas>=2' \
+ 'xarray>=2023' \
+ zarr \
+ dask \
+ netCDF4 \
+ bottleneck \
+ scipy \
+ xrft \
+ numpy_groupies \
+ 'xesmf>=0.7.0' \
+ pint-xarray \
+ gcm_filters \
+ pytest \
+ dvc \
+ tqdm \
+ brotlipy \
+ cmocean \
+ jupyter-book \
+ ghp-import
+
+# Install pip packages
+RUN pip install --upgrade pip && \
+    pip install \
+ git+https://github.com/jejjohnson/ocn-tools.git \
+ hydra-core \
+ pyrootutils \
+ loguru \
+ xrpatcher \
+ autoroot \
+ einops \
+ corner \
+ ipykernel \
+ deepsensor \
+ wandb \
+ torchgeo \
+ black \
+ isort \
+ flake8
+
+# Create a Python 3 Jupyter kernel
+RUN python -m ipykernel install --user --name=oceanbenchKernel
+
+
+ENV workdir /home/user
+# Add the local module directory to the Python path
+ENV PYTHONPATH "${PYTHONPATH}:/home/user/oceanbench"
+WORKDIR ${workdir}
+CMD bash