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Popular repositories

  1. Haplotype-based-Pangenome-Wheat-Analysis Haplotype-based-Pangenome-Wheat-Analysis Public

    This repository contains the files from my master thesis project required to conduct a whole-genome analysis of haploblocks in wheat based on pairwise comparisons between assemblies. This is based …

    R 2

  2. Alignment-density-matters-when-assigning-bins-into-haploblocks Alignment-density-matters-when-assigning-bins-into-haploblocks Public

    Feedback and suggestions for improvement of the method to assign haploblocks from mummer alignments described in the paper 'A haplotype-led approach to increase the precision of wheat breeding'

    HTML

  3. shapeit_reformat shapeit_reformat Public

    The bash script reformats SHAPEIT .haps file to show samples by rows instead of variants by rows

    Shell

  4. PED-file-subset PED-file-subset Public

    Extract families within PED files by providing the name of the file and the individual ID for which the rows corresponding to its ancestors will be extracted

    Shell