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@@ -5,5 +5,4 @@ Includes scripts to clean up folded biopsy regions and image-blurs after annotat
1.`classify_finer_immune.ipynb`
2.`add_dapi_level1.ipynb`
In the working directly, the .h5ad object will be saved at `xenium_outs/merged_processed_classified.h5ad`.
The input file required here is `data/xenium_outs/merged_processed_cleaned.h5ad` at the root of this repository. The output is .h5ad object which will be saved at `data/xenium_outs/merged_processed_classified.h5ad`.
