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* upgrade springboot 2.6.6 and misc dependencies (#200) * cannot start runs on prod #204 -- added config params to enable rabbitmq consumers to reconnect when the connection breaks. * Develop with loggers (#208) * Added logger statements * Added logger statements * research and investigation Co-authored-by: UmmulkiramR <[email protected]> * removed some logging (#211) Co-authored-by: UmmulkiramR <[email protected]> * updated nextflow version for #196 (#212) Co-authored-by: UmmulkiramR <[email protected]> * Nextflow 22 10 7 plugin fix (#213) * changed nextflow library version to use the forked copy that contains the plugins fix * changed repository name * add github token for maven packages --------- Co-authored-by: UmmulkiramR <[email protected]> Co-authored-by: Anders Richardsson <[email protected]> * readme update (#216) * updated readme with instructions on how to use the forked version of the nextflow library * Update README.md Co-authored-by: Anders Richardsson <[email protected]> * Update README.md Co-authored-by: Anders Richardsson <[email protected]> * Update README.md Co-authored-by: Anders Richardsson <[email protected]> * Update README.md Co-authored-by: Anders Richardsson <[email protected]> * Update README.md Co-authored-by: Anders Richardsson <[email protected]> * Update README.md Co-authored-by: Anders Richardsson <[email protected]> * added review suggestions. --------- Co-authored-by: UmmulkiramR <[email protected]> Co-authored-by: Anders Richardsson <[email protected]> * Jenkins migration (#217) * Update Jenkinsfile * docker file update for adding server.xml for maven --------- Co-authored-by: Yelizar Alturmessov <[email protected]> Co-authored-by: UmmulkiramR <[email protected]> * test command edit (#218) Co-authored-by: UmmulkiramR <[email protected]> * update to 3.6.0 contains: - nextflow version change with the forked library - Jenkins file update for cumulus build pipelines. --------- Co-authored-by: jaserud <[email protected]> Co-authored-by: UmmulkiramR <[email protected]> Co-authored-by: Anders Richardsson <[email protected]> Co-authored-by: Anders Richardsson <[email protected]> Co-authored-by: Yelizar Alturmessov <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,136 +1,9 @@ | ||
| def dockerRepo = "ghcr.io/icgc-argo/workflow-management" | ||
| def gitHubRepo = "icgc-argo/workflow-management" | ||
| def commit = "UNKNOWN" | ||
| def version = "UNKNOWN" | ||
|
|
||
| pipeline { | ||
| agent { | ||
| kubernetes { | ||
| label 'wf-management' | ||
| yaml """ | ||
| apiVersion: v1 | ||
| kind: Pod | ||
| spec: | ||
| containers: | ||
| - name: jdk | ||
| tty: true | ||
| image: openjdk:11 | ||
| env: | ||
| - name: DOCKER_HOST | ||
| value: tcp://localhost:2375 | ||
| - name: dind-daemon | ||
| image: docker:18.06-dind | ||
| securityContext: | ||
| privileged: true | ||
| runAsUser: 0 | ||
| volumeMounts: | ||
| - name: docker-graph-storage | ||
| mountPath: /var/lib/docker | ||
| - name: helm | ||
| image: alpine/helm:2.12.3 | ||
| command: | ||
| - cat | ||
| tty: true | ||
| - name: docker | ||
| image: docker:18-git | ||
| tty: true | ||
| env: | ||
| - name: DOCKER_HOST | ||
| value: tcp://localhost:2375 | ||
| - name: HOME | ||
| value: /home/jenkins/agent | ||
| securityContext: | ||
| runAsUser: 1000 | ||
| volumes: | ||
| - name: docker-graph-storage | ||
| emptyDir: {} | ||
| """ | ||
| } | ||
| } | ||
| stages { | ||
| stage('Prepare') { | ||
| steps { | ||
| script { | ||
| commit = sh(returnStdout: true, script: 'git describe --always').trim() | ||
| } | ||
| script { | ||
| version = readMavenPom().getVersion() | ||
| } | ||
| } | ||
| } | ||
| stage('Test') { | ||
| steps { | ||
| container('jdk') { | ||
| sh "./mvnw test" | ||
| } | ||
| } | ||
| } | ||
| stage('Build & Publish Develop') { | ||
| when { | ||
| branch "develop" | ||
| } | ||
| steps { | ||
| container('docker') { | ||
| withCredentials([usernamePassword(credentialsId:'argoContainers', usernameVariable: 'USERNAME', passwordVariable: 'PASSWORD')]) { | ||
| sh 'docker login ghcr.io -u $USERNAME -p $PASSWORD' | ||
| } | ||
|
|
||
| // DNS error if --network is default | ||
| sh "docker build --network=host . -t ${dockerRepo}:edge -t ${dockerRepo}:${version}-${commit}" | ||
|
|
||
| sh "docker push ${dockerRepo}:${version}-${commit}" | ||
| sh "docker push ${dockerRepo}:edge" | ||
| } | ||
| } | ||
| } | ||
|
|
||
| stage('deploy to rdpc-collab-dev') { | ||
| when { | ||
| branch "develop" | ||
| } | ||
| steps { | ||
| build(job: "/provision/update-app-version", parameters: [ | ||
| [$class: 'StringParameterValue', name: 'RDPC_ENV', value: 'dev' ], | ||
| [$class: 'StringParameterValue', name: 'TARGET_RELEASE', value: 'management'], | ||
| [$class: 'StringParameterValue', name: 'NEW_APP_VERSION', value: "${version}-${commit}" ] | ||
| ]) | ||
| } | ||
| } | ||
|
|
||
| stage('Release & Tag') { | ||
| when { | ||
| branch "master" | ||
| } | ||
| steps { | ||
| container('docker') { | ||
| withCredentials([usernamePassword(credentialsId: 'argoGithub', passwordVariable: 'GIT_PASSWORD', usernameVariable: 'GIT_USERNAME')]) { | ||
| sh "git tag ${version}" | ||
| sh "git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/${gitHubRepo} --tags" | ||
| } | ||
|
|
||
| withCredentials([usernamePassword(credentialsId:'argoContainers', usernameVariable: 'USERNAME', passwordVariable: 'PASSWORD')]) { | ||
| sh 'docker login ghcr.io -u $USERNAME -p $PASSWORD' | ||
| } | ||
|
|
||
| // DNS error if --network is default | ||
| sh "docker build --network=host . -t ${dockerRepo}:latest -t ${dockerRepo}:${version}" | ||
|
|
||
| sh "docker push ${dockerRepo}:${version}" | ||
| sh "docker push ${dockerRepo}:latest" | ||
| } | ||
| } | ||
| } | ||
| stage('deploy to rdpc-collab-qa') { | ||
| when { | ||
| branch "master" | ||
| } | ||
| steps { | ||
| build(job: "/provision/update-app-version", parameters: [ | ||
| [$class: 'StringParameterValue', name: 'RDPC_ENV', value: 'qa' ], | ||
| [$class: 'StringParameterValue', name: 'TARGET_RELEASE', value: 'management'], | ||
| [$class: 'StringParameterValue', name: 'NEW_APP_VERSION', value: "${version}" ] | ||
| ]) | ||
| } | ||
| } | ||
| } | ||
| } | ||
| @Library(value='jenkins-pipeline-library@master', changelog=false) _ | ||
| pipelineRDPCWorkflowManagement( | ||
| buildImage: "openjdk:11", | ||
| dockerRegistry: "ghcr.io", | ||
| dockerRepo: "icgc-argo/workflow-management", | ||
| gitRepo: "icgc-argo/workflow-management", | ||
| testCommand: "./mvnw test", | ||
| helmRelease: "management" | ||
| ) |
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