2.2.0

What's Changed

• Implement one-vs-all comparisons by @hoelzer in #14

I added the one-vs-all mode now. It is automatically activated when you specify a specific genome (--genome) or protein FASTA (--protein) in addition to the default input --genomes or --proteins. If you do that, the comparisons will only be made between the additional genome/protein FASTA vs all others.

For example:

nextflow pull hoelzer/pocp
nextflow run hoelzer/pocp -r 2.2.0 --genomes 'example/*.fasta' --genome example/Cav_10DC88.fasta -profile local,docker

will give you

❯ cat results/pop-matrix.tsv
ID	Cav_10DC88	Cav_11DC096	Cga_08-1274-3	Cga_12-4358	Ctr_A-HAR-13
Cav_10DC88	100.0	98.9172	96.5928	96.4865	83.171
Cav_11DC096	98.9172	100.0	0.0	0.0	0.0
Cga_08-1274-3	96.5928	0.0	100.0	0.0	0.0
Cga_12-4358	96.4865	0.0	0.0	100.0	0.0
Ctr_A-HAR-13	83.171	0.0	0.0	0.0	100.0

Full Changelog: 2.1.0...2.2.0