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fix help for input example
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hoelzer committed Feb 22, 2024
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2 changes: 1 addition & 1 deletion main.nf
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Expand Up @@ -916,7 +916,7 @@ def helpMSG() {
${c_dim}Genomes and annotations from --autodownload, --genome and --annotation are concatenated.${c_reset}
${c_yellow}Input:${c_reset}
${c_green}--reads${c_reset} A CSV file following the pattern: Sample,R,Condition,Source for single-end or Sample,R1,R2,Condition,Source for paired-end
${c_green}--reads${c_reset} A CSV file following the pattern: Sample,R1,R2,Condition,Source,Strandedness. For single-end data, leave column R2 empty.
${c_dim}(check terminal output if correctly assigned)
Per default, all possible comparisons of conditions in one direction are made. Use --deg to change.${c_reset}
${c_green}--autodownload${c_reset} Specifies the species identifier for automated download [default: $params.autodownload]
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