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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

Pinned

  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 10 10

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 16 9

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 36 9

  4. protmapper protmapper Public

    Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 5 7

  5. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 6 5

  6. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 6 8

Repositories

Showing 10 of 48 repositories
  • mira Public

    MIRA modeling framework

    gyorilab/mira’s past year of commit activity
    Jupyter Notebook 8 BSD-2-Clause 6 10 3 Updated Jun 19, 2024
  • gyorilab.github.io Public

    Gyori Lab website

    gyorilab/gyorilab.github.io’s past year of commit activity
    JavaScript 3 3 0 0 Updated Jun 19, 2024
  • selventa-knowledge Public Forked from cthoyt/selventa-knowledge

    Updated versions of the Selventa Small and Large Corpus

    gyorilab/selventa-knowledge’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Jun 15, 2024
  • protmapper_paper Public

    Code to generate results and figures relevant to the ProtMapper manuscript.

    gyorilab/protmapper_paper’s past year of commit activity
    Python 1 1 0 0 Updated Jun 15, 2024
  • gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    gyorilab/gilda’s past year of commit activity
    Python 36 BSD-2-Clause 9 8 3 Updated Jun 14, 2024
  • adeft Public

    Tool for disambiguating acronyms and abbreviations in text for NLP applications

    gyorilab/adeft’s past year of commit activity
    Python 20 BSD-2-Clause 10 2 0 Updated Jun 12, 2024
  • trialsynth Public

    TrialSynth interprets and integrates clinical trials data from multiple registries in a computable form

    gyorilab/trialsynth’s past year of commit activity
    Python 0 BSD-2-Clause 1 0 1 Updated Jun 12, 2024
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex’s past year of commit activity
    Jupyter Notebook 6 BSD-2-Clause 8 17 5 Updated Jun 12, 2024
  • emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    gyorilab/emmaa’s past year of commit activity
    Python 10 BSD-2-Clause 10 1 4 Updated Jun 8, 2024
  • ui_util Public

    This repo creates general utilities for our user interfaces.

    gyorilab/ui_util’s past year of commit activity
    Python 0 4 0 2 Updated Jun 7, 2024
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