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Join filter queries using Intersect and Union #2742

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Original file line number Diff line number Diff line change
Expand Up @@ -2530,6 +2530,92 @@ class DatabaseImplTest {
assertThat(result.map { it.resource.logicalId }).containsExactly("100").inOrder()
}

@Test
fun search_patient_with_given_disjoint_and_has_diabetes() {
runBlocking {
val jane =
Patient().apply {
id = "jane-001"
addName(
HumanName().apply {
addGiven("Jane")
family = "Doe"
},
)
}
val john =
Patient().apply {
id = "john-001"
addName(
HumanName().apply {
addGiven("John")
family = "Doe"
},
)
}
val jade =
Patient().apply {
id = "jade-001"
addName(
HumanName().apply {
addGiven("Jade")
family = "Doe"
},
)
}

val diabetes1 =
Condition().apply {
subject = Reference("Patient/${jane.logicalId}")
code = CodeableConcept(Coding("http://snomed.info/sct", "44054006", "Diabetes"))
}
val diabetes2 =
Condition().apply {
subject = Reference("Patient/${john.logicalId}")
code = CodeableConcept(Coding("http://snomed.info/sct", "44054006", "Diabetes"))
}
val diabetes3 =
Condition().apply {
subject = Reference("Patient/${jade.logicalId}")
code = CodeableConcept(Coding("http://snomed.info/sct", "44054006", "Diabetes"))
}
database.insert(jane, jade, john, diabetes1, diabetes2, diabetes3)

val result =
database.search<Patient>(
Search(ResourceType.Patient)
.apply {
has<Condition>(Condition.SUBJECT) {
filter(
Condition.CODE,
{ value = of(Coding("http://snomed.info/sct", "44054006", "Diabetes")) },
)
}

filter(
Patient.GIVEN,
{
value = "John"
modifier = StringFilterModifier.MATCHES_EXACTLY
},
)

filter(
Patient.GIVEN,
{
value = "Jane"
modifier = StringFilterModifier.MATCHES_EXACTLY
},
)
operation = Operation.OR
}
.getQuery(),
)

assertThat(result.map { it.resource.logicalId }).containsExactly("jane-001", "john-001")
}
}

@Test
fun search_patient_return_single_patient_who_has_diabetic_careplan() = runBlocking {
val patient =
Expand Down Expand Up @@ -2723,78 +2809,79 @@ class DatabaseImplTest {
}

@Test
fun test_search_multiple_param_disjunction_covid_immunization_records() = runBlocking {
val resources =
listOf(
Immunization().apply {
id = "immunization-1"
vaccineCode =
CodeableConcept(
Coding(
"http://id.who.int/icd11/mms",
"XM1NL1",
"COVID-19 vaccine, inactivated virus",
),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
Immunization().apply {
id = "immunization-2"
vaccineCode =
CodeableConcept(
Coding(
"http://id.who.int/icd11/mms",
"XM5DF6",
"COVID-19 vaccine, live attenuated virus",
),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
Immunization().apply {
id = "immunization-3"
vaccineCode =
CodeableConcept(
Coding("http://id.who.int/icd11/mms", "XM6AT1", "COVID-19 vaccine, DNA based"),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
Immunization().apply {
id = "immunization-4"
vaccineCode =
CodeableConcept(
Coding(
"http://hl7.org/fhir/sid/cvx",
"140",
"Influenza, seasonal, injectable, preservative free",
),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
)
fun test_search_multiple_param_disjunction_covid_immunization_records() {
runBlocking {
val resources =
listOf(
Immunization().apply {
id = "immunization-1"
vaccineCode =
CodeableConcept(
Coding(
"http://id.who.int/icd11/mms",
"XM1NL1",
"COVID-19 vaccine, inactivated virus",
),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
Immunization().apply {
id = "immunization-2"
vaccineCode =
CodeableConcept(
Coding(
"http://id.who.int/icd11/mms",
"XM5DF6",
"COVID-19 vaccine, live attenuated virus",
),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
Immunization().apply {
id = "immunization-3"
vaccineCode =
CodeableConcept(
Coding("http://id.who.int/icd11/mms", "XM6AT1", "COVID-19 vaccine, DNA based"),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
Immunization().apply {
id = "immunization-4"
vaccineCode =
CodeableConcept(
Coding(
"http://hl7.org/fhir/sid/cvx",
"140",
"Influenza, seasonal, injectable, preservative free",
),
)
status = Immunization.ImmunizationStatus.COMPLETED
},
)

database.insert(*resources.toTypedArray())
database.insert(*resources.toTypedArray())

val result =
database.search<Immunization>(
Search(ResourceType.Immunization)
.apply {
filter(
Immunization.VACCINE_CODE,
{ value = of(Coding("http://id.who.int/icd11/mms", "XM1NL1", "")) },
)
val result =
database.search<Immunization>(
Search(ResourceType.Immunization)
.apply {
filter(
Immunization.VACCINE_CODE,
{ value = of(Coding("http://id.who.int/icd11/mms", "XM1NL1", "")) },
)

filter(
Immunization.VACCINE_CODE,
{ value = of(Coding("http://id.who.int/icd11/mms", "XM5DF6", "")) },
)
operation = Operation.OR
}
.getQuery(),
)
filter(
Immunization.VACCINE_CODE,
{ value = of(Coding("http://id.who.int/icd11/mms", "XM5DF6", "")) },
)
operation = Operation.OR
}
.getQuery(),
)

assertThat(result.map { it.resource.vaccineCode.codingFirstRep.code })
.containsExactly("XM1NL1", "XM5DF6")
.inOrder()
assertThat(result.map { it.resource.vaccineCode.codingFirstRep.code })
.containsExactly("XM1NL1", "XM5DF6")
}
}

@Test
Expand Down
26 changes: 14 additions & 12 deletions engine/src/main/java/com/google/android/fhir/search/MoreSearch.kt
Original file line number Diff line number Diff line change
Expand Up @@ -364,17 +364,13 @@ internal fun Search.getQuery(
val sortArgs = join.args

val filterQuery = getFilterQueries()
val filterQueryStatement =
filterQuery.joinToString(separator = "${operation.logicalOperator} ") {
// spotless:off
"""
a.resourceUuid IN (
${it.query}
)

""".trimIndent()
// spotless:on
val filterQueryJoinOperator =
when (operation) {
Operation.OR -> "\nUNION\n"
Operation.AND -> "\nINTERSECT\n"
}
val filterQueryStatement =
filterQuery.joinToString(separator = filterQueryJoinOperator) { it.query.trimIndent() }
val filterQueryArgs = filterQuery.flatMap { it.args }

var limitStatement = ""
Expand All @@ -398,8 +394,14 @@ internal fun Search.getQuery(
val filterStatement =
listOf(filterQueryStatement, nestedQueryFilterStatement)
.filter { it.isNotBlank() }
.joinToString(separator = " AND ")
.ifBlank { "a.resourceType = ?" }
.joinToString(separator = "\nINTERSECT\n")
.takeIf { it.isNotBlank() }
?.let { """a.resourceUuid IN (
$it
)
""" }
?: "a.resourceType = ?"

val filterArgs = (filterQueryArgs + nestedQueryFilterArgs).ifEmpty { listOf(type.name) }

val whereArgs = mutableListOf<Any>()
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -214,15 +214,20 @@ internal fun List<NestedSearch>.nestedQuery(
return if (isEmpty()) {
null
} else {
val filterJoinOperator =
when (operation) {
Operation.OR -> "\nUNION\n"
Operation.AND -> "\nINTERSECT\n"
}

map { it.nestedQuery(type) }
.let { searchQueries ->
SearchQuery(
query =
searchQueries.joinToString(
prefix = "a.resourceUuid IN ",
separator = " ${operation.logicalOperator} a.resourceUuid IN",
separator = " $filterJoinOperator",
) { searchQuery ->
"(\n${searchQuery.query}\n) "
"\n${searchQuery.query}\n"
},
args = searchQueries.flatMap { it.args },
)
Expand Down
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