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goodarzilab

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  1. pyteiser pyteiser Public

    Python implementation of TEISER also capable of using SHAPE structural probing data

    Python 11 9

  2. pypage pypage Public

    python implementation of the PAGE algorithm

    Python 8 2

  3. Ribolog Ribolog Public

    A suite of regression-based tools for ribosome profiling data analysis

    Jupyter Notebook 6 1

  4. SwitchFinder SwitchFinder Public

    Python 5 1

  5. Basenji-Pytorch Basenji-Pytorch Public

    Jupyter Notebook 4 1

  6. APAlog APAlog Public

    A tool for quantification of alternative poly A usage

    R 3 1

Repositories

Showing 10 of 26 repositories
  • Pan-oncRNA Public
    goodarzilab/Pan-oncRNA’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 27, 2024
  • RBP_modules Public
    goodarzilab/RBP_modules’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Jun 6, 2024
  • pypage Public

    python implementation of the PAGE algorithm

    goodarzilab/pypage’s past year of commit activity
    Python 8 MIT 2 17 0 Updated Apr 30, 2024
  • goodarzilab.github.io Public

    Lab website

    goodarzilab/goodarzilab.github.io’s past year of commit activity
    HTML 0 1 0 0 Updated Mar 30, 2024
  • DMS-tutorial Public

    Assorted scripts for processing DMS-Seq data

    goodarzilab/DMS-tutorial’s past year of commit activity
    HTML 1 0 0 0 Updated Jan 31, 2024
  • Abe Public
    goodarzilab/Abe’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 4, 2024
  • SwitchFinder Public
    goodarzilab/SwitchFinder’s past year of commit activity
    Python 5 MIT 1 3 1 Updated Dec 19, 2023
  • OpenTrons_2 Public

    Repository for OpenTrons code

    goodarzilab/OpenTrons_2’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 28, 2023
  • IRIS Public

    Notebook for identification of RNA antisense species (IRIS)

    goodarzilab/IRIS’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 23, 2023
  • pythia Public

    Scripts for training and predicting binding of RBPs

    goodarzilab/pythia’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 23, 2023
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