This might be handy for nucleotide download #25

langelog · 2020-04-06T23:20:45Z

library to download nucleotides by name according to ncbi library.
It uses BeautifulSoup to parse html.

usage example:

import nucleotide
RNA = {}
# If its not already downloaded, will download and put it in data directory
# and return the rna
RNA["NC_045512.2"] = nucleotide.get("NC_045512.2")

library to download nucleotides by name according to ncbi library

langelog · 2020-04-06T23:25:05Z

nucleotide.py

+ except Exception as err:
+ print(err)
+
+fasta_files = [join(data_dir,f) for f in listdir(data_dir) if isfile(join(data_dir, f)) and fasta_pattern.match(f)]


woops, this line should be in available() function

This might be handy

95af646

library to download nucleotides by name according to ncbi library

langelog changed the title ~~This might be handy~~ This might be handy for any nucleotide download Apr 6, 2020

langelog changed the title ~~This might be handy for any nucleotide download~~ This might be handy for nucleotide download Apr 6, 2020

langelog commented Apr 7, 2020

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Update nucleotide.py

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This might be handy for nucleotide download #25

This might be handy for nucleotide download #25

langelog commented Apr 6, 2020 •

edited

langelog Apr 6, 2020

This might be handy for nucleotide download #25

Are you sure you want to change the base?

This might be handy for nucleotide download #25

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langelog commented Apr 6, 2020 • edited

langelog Apr 6, 2020

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langelog commented Apr 6, 2020 •

edited