v0.5.1

What's Changed

• Fixes the number wasserstein error
• change python-igraph to igraph by @szhorvat in #26

Full Changelog: v0.5.0...v0.5.1

v0.5.0

v0.5.0 marks a major overhaul of the Cell BLAST code base, where obsolete dependencies and have been replaced by modern solutions. Meanwhile, care has been taken to ensure that the new implementation has the same high-level API, and generates results consistent with the old one.

Major changes include:

1. Switched model backend from the old Tensorflow v1 to PyTorch;
2. Ditched in-house data class and file format in favor of AnnData.

See our migration guide for details on any necessary change to existing code and data utilizing Cell BLAST.

v0.3.8

Minor bug fixes.

v0.3.7

• Additional evaluations
• Minor bug fixes

v0.3.6

• Added gradient-based gene ranking for model interpretation
• Added BLAST2CO
• New reference datasets

v0.2.14

Cell BLAST package update:

• Support training and querying on unnormalized data, with preprocessing performed internally.
• Improve API for the BLAST class.
• Various bug fixes.

Evaluation update:

• Improved benchmarks and add new experiments.
• Rewrote all pipelines with snakemake.

v0.1.2

• Add jitter for violin
• Add html version of the tutorials
• Other minor changes

v0.1.1

Fix an inference issue under 'memory' mode.

v0.1.0

First public release