make fraser2 the default in demo and init

gagneurlab · Oct 7, 2024 · 4eb8876 · 4eb8876
1 parent d946b01
commit 4eb8876
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Showing 2 changed files with 12 additions and 12 deletions.
diff --git a/drop/demo/config_relative.yaml b/drop/demo/config_relative.yaml
@@ -42,16 +42,16 @@ aberrantSplicing:
     keepNonStandardChrs: false
     filter: false
     minExpressionInOneSample: 20
-    quantileMinExpression: 10 
-    quantileForFiltering: 0.95 
+    quantileMinExpression: 10  
     minDeltaPsi: 0.05
     implementation: PCA
     padjCutoff: 1 
     maxTestedDimensionProportion: 6
     genesToTest: "Data/genes_to_test.yaml"
-    ### FRASER1 configuration for demo dataset
-    FRASER_version: "FRASER" 
+    ### FRASER2 configuration for demo dataset
+    FRASER_version: "FRASER2"
     deltaPsiCutoff : 0.05 
+    quantileForFiltering: 0.95
 
 mae:
     run: true

diff --git a/drop/template/config.yaml b/drop/template/config.yaml
@@ -51,14 +51,14 @@ aberrantSplicing:
     padjCutoff: 0.1
     maxTestedDimensionProportion: 6
     genesToTest: null
-    ### FRASER1 configuration
-    FRASER_version: "FRASER" 
-    deltaPsiCutoff : 0.3 
-    quantileForFiltering: 0.95 
-    ### For FRASER2, use the follwing parameters instead of the 3 lines above:
-    # FRASER_version: "FRASER2"
-    # deltaPsiCutoff : 0.1
-    # quantileForFiltering: 0.75
+    ### FRASER2 configuration
+    FRASER_version: "FRASER2"
+    deltaPsiCutoff : 0.1
+    quantileForFiltering: 0.75
+    ### For FRASER1, use the follwing parameters instead of the 3 lines above:
+    # FRASER_version: "FRASER"
+    # deltaPsiCutoff : 0.3
+    # quantileForFiltering: 0.95
 
 mae:
     run: true