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v1.2.3

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@endixk endixk released this 01 Feb 02:04
· 3 commits to main since this release

Major updates

  • bioconda support - #16, thanks to @aaronmussig
  • Added convertdb module - #17
    • Basically convert module backwards; reverts mmseqs database to CDS FASTA file
  • Added -self flag to calculate module - #18
    • Explicitly indicates self batch comparison, in which -i and -j inputs are identical
    • Skips redundant comparisons and assumes self-comparsion to be 100% AAI
    • Improves calculation throughput by slightly more than factor of 2
  • Fixed logical flaw around average calculations with custom identity value given - #19

Minor updates

  • Added -u option to cluster module, which substitutes leaf labels to UIDs
  • Temp directory can be now customized using -tmp option in most of the modules
  • extract and convert modules now add ezaai_ prefix to the CDS fasta headers to evade mmseqs header parser
  • Compilable maven settings
  • Help text formatting